CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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genemark-nMf.1.1.scaf00584-processed-gene-0.4
(
Meloidogyne floridensis
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
genemark-nMf.1.1.scaf00584-processed-gene-0.4
T308646_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-34
M00690_2.00
Caenorhabditis elegans
NNNNDHYRNN
NNYRDHNNNN
PBM
Narasimhan et al.(2015)
pTH9907
0.847
0.614
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
genemark-nMf.1.1.scaf00584-processed-gene-0.4-mRNA-1
Nuclear receptor
3
72
KSCEVCGDVPFGKHYGVTACNGCKGFFRRSICNRRSYICRYGSTCPIVKEQRNACRACRLKKCFEAGMNP
Links
Other
Nuclear receptor
family TFs
Other
Meloidogyne floridensis
TFs
127 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MhA1_Contig1031.frz3.gene17
Meloidogyne hapla
MhA1_Contig1031.frz3.gene17
N
0.986
L596_g9904
Steinernema carpocapsae
L596_g9904
I
0.984
L892_g17832
Steinernema scapterisci
L892_g17832
I
0.984
ACAC_0000956101
Angiostrongylus cantonensis
ACAC_0000956101
I
0.981
CBN28641
Caenorhabditis brenneri
CBN28641
I
0.981
CJA14611
Caenorhabditis japonica
CJA14611
I
0.981
CRE29874
Caenorhabditis remanei
CRE29874
I
0.981
HCOI00094500
Haemonchus contortus
HCOI00094500
I
0.981
ACOC_0000749401
Angiostrongylus costaricensis
ACOC_0000749401
I
0.981
nhr-4
Caenorhabditis elegans
WBGene00003603
I
0.981
DICVIV_01644
Dictyocaulus viviparus
DICVIV_01644
I
0.981
HPBE_0001524301
Heligmosomoides bakeri
HPBE_0001524301
I
0.981
HCOI01442000
Haemonchus contortus
HCOI01442000
I
0.981
CBG03466
Caenorhabditis briggsae
CBG03466
I
0.981
L889_g366
Steinernema feltiae
L889_g366
I
0.974
L893_g5404
Steinernema glaseri
L893_g5404
I
0.974
BXY_0053200
Bursaphelenchus xylophilus
BXY_0053200
I
0.971
scaffold277-EXSNAP2012.12
Pristionchus exspectatus
scaffold277-EXSNAP2012.12
I
0.970
CRE22212
Caenorhabditis remanei
CRE22212
I
0.970
DICVIV_11073
Dictyocaulus viviparus
DICVIV_11073
I
0.970
HPLM_0001358001
Haemonchus placei
HPLM_0001358001
I
0.968
CJA19445
Caenorhabditis japonica
CJA19445
I
0.968
CBG03860
Caenorhabditis briggsae
CBG03860
I
0.968
HCOI01945300
Haemonchus contortus
HCOI01945300
I
0.968
Hba_17038
Heterorhabditis bacteriophora
Hba_17038
I
0.968
nhr-62
Caenorhabditis elegans
WBGene00003652
I
0.968
HCOI02126500
Haemonchus contortus
HCOI02126500
I
0.968
CBN05776
Caenorhabditis brenneri
CBN05776
I
0.968
CRE08264
Caenorhabditis remanei
CRE08264
I
0.968
Ppa-nhr-61
Pristionchus pacificus
PPA27722
I
0.967
HPBE_0001438801
Heligmosomoides bakeri
HPBE_0001438801
I
0.965
L596_g26401
Steinernema carpocapsae
L596_g26401
I
0.963
L892_g17146
Steinernema scapterisci
L892_g17146
I
0.963
L898_g5338
Steinernema monticolum
L898_g5338
I
0.962
L893_g6565
Steinernema glaseri
L893_g6565
I
0.962
L889_g16305
Steinernema feltiae
L889_g16305
I
0.962
PPA14696
Pristionchus pacificus
PPA14696
I
0.961
PTRK_0001236400
Parastrongyloides trichosuri
PTRK_0001236400
I
0.956
CJA02727
Caenorhabditis japonica
CJA02727
I
0.943
nhr-21
Caenorhabditis elegans
WBGene00003620
I
0.941
CBG13142
Caenorhabditis briggsae
CBG13142
I
0.941
CRE26423
Caenorhabditis remanei
CRE26423
I
0.941
CBN32300
Caenorhabditis brenneri
CBN32300
I
0.941
CBN04415
Caenorhabditis brenneri
CBN04415
I
0.941
nhr-61
Caenorhabditis elegans
WBGene00003651
I
0.938
CJA06107
Caenorhabditis japonica
CJA06107
I
0.938
genemark-nMf.1.1.scaf02603-processed-gene-0.3
Meloidogyne floridensis
genemark-nMf.1.1.scaf02603-processed-gene-0.3
I
0.932
CBG04240
Caenorhabditis briggsae
CBG04240
I
0.916
L596_g7829
Steinernema carpocapsae
L596_g7829
I
0.911
BXY_1082600
Bursaphelenchus xylophilus
BXY_1082600
I
0.909
L892_g3438
Steinernema scapterisci
L892_g3438
I
0.909
CRE24933
Caenorhabditis remanei
CRE24933
I
0.907
L893_g33656
Steinernema glaseri
L893_g33656
I
0.901
L889_g15424
Steinernema feltiae
L889_g15424
I
0.901
L898_g9613
Steinernema monticolum
L898_g9613
I
0.899
SVE_0105800
Strongyloides venezuelensis
SVE_0105800
I
0.897
SSTP_0000860300
Strongyloides stercoralis
SSTP_0000860300
I
0.897
SPAL_0000533900
Strongyloides papillosus
SPAL_0000533900
I
0.897
RSKR_0000426600
Rhabditophanes kr3021
RSKR_0000426600
N
0.888
EVEC_0000864401
Enterobius vermicularis
EVEC_0000864401
I
0.884
ASU_00971
Ascaris suum
ASU_00971
I
0.884
SMUV_0000230901
Syphacia muris
SMUV_0000230901
I
0.884
CJA14248
Caenorhabditis japonica
CJA14248
I
0.875
L596_g25910
Steinernema carpocapsae
L596_g25910
I
0.873
L898_g11608
Steinernema monticolum
L898_g11608
I
0.873
L889_g31970
Steinernema feltiae
L889_g31970
I
0.873
L893_g263
Steinernema glaseri
L893_g263
I
0.873
SVUK_0000195901
Strongylus vulgaris
SVUK_0000195901
I
0.857
TELCIR_07460
Teladorsagia circumcincta
TELCIR_07460
I
0.857
HCOI01927800
Haemonchus contortus
HCOI01927800
I
0.857
ANCCAN_22066
Ancylostoma caninum
ANCCAN_22066
I
0.857
ANCDUO_15746
Ancylostoma duodenale
ANCDUO_15746
I
0.857
ANCCEY_12461
Ancylostoma ceylanicum
ANCCEY_12461
I
0.857
NBR_0000015501
Nippostrongylus brasiliensis
NBR_0000015501
I
0.852
NECAME_02375
Necator americanus
NECAME_02375
I
0.852
CBG22587
Caenorhabditis briggsae
CBG22587
I
0.850
PTRK_0000748600
Parastrongyloides trichosuri
PTRK_0000748600
I
0.850
CRE07033
Caenorhabditis remanei
CRE07033
I
0.850
CRE10779
Caenorhabditis remanei
CRE10779
I
0.850
nhr-34
Caenorhabditis elegans
WBGene00003627
D
0.847
NECAME_11708
Necator americanus
NECAME_11708
N
0.841
scaffold488-EXSNAP2012.17
Pristionchus exspectatus
scaffold488-EXSNAP2012.17
I
0.839
Hba_12763
Heterorhabditis bacteriophora
Hba_12763
I
0.830
scaffold52-EXSNAP2012.30
Pristionchus exspectatus
scaffold52-EXSNAP2012.30
I
0.828
CRE09416
Caenorhabditis remanei
CRE09416
I
0.817
RSKR_0000178700
Rhabditophanes kr3021
RSKR_0000178700
I
0.794
HPLM_0000308401
Haemonchus placei
HPLM_0000308401
I
0.783
OESDEN_00859
Oesophagostomum dentatum
OESDEN_00859
I
0.783
ANCCAN_20599
Ancylostoma caninum
ANCCAN_20599
I
0.783
CGOC_0000279901
Cylicostephanus goldi
CGOC_0000279901
I
0.783
nOo.2.0.1.g02628
Onchocerca ochengi
nOo.2.0.1.g02628
I
0.782
TCLT_0000342401
Thelazia callipaeda
TCLT_0000342401
I
0.782
TCNE_0000582701
Toxocara canis
TCNE_0000582701
I
0.782
OFLC_0000076301
Onchocerca flexuosa
OFLC_0000076301
I
0.782
CBG22776
Caenorhabditis briggsae
CBG22776
I
0.782
CJA14035
Caenorhabditis japonica
CJA14035
I
0.782
CBN08474
Caenorhabditis brenneri
CBN08474
I
0.782
CRE21925
Caenorhabditis remanei
CRE21925
I
0.782
scaffold1338-EXSNAP2012.3
Pristionchus exspectatus
scaffold1338-EXSNAP2012.3
I
0.782
nLs.2.1.2.g04526
Litomosoides sigmodontis
nLs.2.1.2.g04526
I
0.782
L596_g9277
Steinernema carpocapsae
L596_g9277
I
0.782
L892_g186
Steinernema scapterisci
L892_g186
I
0.782
nDi.2.2.2.g03974
Dirofilaria immitis
nDi.2.2.2.g03974
I
0.782
ASIM_0001548701
Anisakis simplex
ASIM_0001548701
I
0.782
BTMF_0001565301
Brugia timori
BTMF_0001565301
I
0.782
EEL_0000265301
Elaeophora elaphi
EEL_0000265301
I
0.782
L889_g25097
Steinernema feltiae
L889_g25097
I
0.782
WBGene00239376
Onchocerca volvulus
WBGene00239376
I
0.782
Bm5457
Brugia malayi
Bm5457
I
0.782
Ppa-nhr-14
Pristionchus pacificus
PPA06980
I
0.782
LOAG_07549
Loa loa
LOAG_07549
I
0.782
nAv.1.0.1.g08447
Acanthocheilonema viteae
nAv.1.0.1.g08447
I
0.782
L898_g18440
Steinernema monticolum
L898_g18440
I
0.782
nhr-14
Caenorhabditis elegans
WBGene00003613
I
0.782
HPBE_0001033901
Heligmosomoides bakeri
HPBE_0001033901
I
0.780
PTRK_0001591500
Parastrongyloides trichosuri
PTRK_0001591500
I
0.778
SVE_1768400
Strongyloides venezuelensis
SVE_1768400
I
0.778
SPAL_0001056000
Strongyloides papillosus
SPAL_0001056000
I
0.778
SSTP_0000230100
Strongyloides stercoralis
SSTP_0000230100
I
0.778
GPLIN_000327200
Globodera pallida
GPLIN_000327200
I
0.773
CBG14996
Caenorhabditis briggsae
CBG14996
I
0.767
nhr-118
Caenorhabditis elegans
WBGene00003708
I
0.765
L893_g6023
Steinernema glaseri
L893_g6023
I
0.763
SMUV_0000835401
Syphacia muris
SMUV_0000835401
I
0.761
SMUV_0001036101
Syphacia muris
SMUV_0001036101
I
0.761
RSKR_0001175400
Rhabditophanes kr3021
RSKR_0001175400
I
0.761
Hba_17946
Heterorhabditis bacteriophora
Hba_17946
I
0.747