CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Phyra74523
(
Phytophthora ramorum
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
Phyra74523
T331988_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Phyra74523
Sox
204
249
ERRAKAAYKAFEEVMMPQVREDYPGLKLSQYKQKLSEMWRRSPDNP
Links
Other
Sox
family TFs
Other
Phytophthora ramorum
TFs
103 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
fgenesh_scip_prom.28083.7036
Phytophthora lateralis
fgenesh_scip_prom.28083.7036
N
0.741
Physo132366
Phytophthora sojae
Physo132366
N
0.716
F443_19335
Phytophthora parasitica
F443_19335
N
0.716
fgenesh1_pg.C_scaffold_73784000001
Phytophthora capsici
fgenesh1_pg.C_scaffold_73784000001
N
0.683
estExt_fgenesh1_kg.C_80399
Phytophthora capsici
estExt_fgenesh1_kg.C_80399
N
0.683
PYU1_G003004
Pythium ultimum
PYU1_G003004
N
0.676
SPRG_06372
Saprolegnia parasitica
SPRG_06372
N
0.676
fgenesh_scip_prom.46568.2049
Phytophthora kernoviae
fgenesh_scip_prom.46568.2049
N
0.655
maker-pir_contig_430-fgenesh-gene-0.3
Pythium irregulare
maker-pir_contig_430-fgenesh-gene-0.3
N
0.644
maker-piw_contig_1911-snap-gene-0.6
Pythium iwayamai
maker-piw_contig_1911-snap-gene-0.6
N
0.644
maker-pve_contig_105-snap-gene-0.29
Pythium vexans
maker-pve_contig_105-snap-gene-0.29
N
0.632
ALNC14_126360
Albugo laibachii
ALNC14_126360
N
0.616
MCINX012524
Melitaea cinxia
MCINX012524
I
0.600
CpipJ_CPIJ005084
Culex pipiens
CpipJ_CPIJ005084
N
0.599
CPIJ005084
Culex quinquefasciatus
CPIJ005084
N
0.599
RPRC009760
Rhodnius prolixus
RPRC009760
N
0.599
AALB007196
Anopheles albimanus
AALB007196
N
0.586
ADAC009894
Anopheles darlingi
ADAC009894
N
0.586
ADIR002941
Anopheles dirus
ADIR002941
N
0.586
AATE006267
Anopheles atroparvus
AATE006267
N
0.586
OESDEN_05486
Oesophagostomum dentatum
OESDEN_05486
N
0.582
CapteG224864
Capitella teleta
CapteG224864
I
0.578
GPUH_0000676401
Gongylonema pulchrum
GPUH_0000676401
N
0.574
tetur18g00680
Tetranychus urticae
tetur18g00680
I
0.571
ASU_10445
Ascaris suum
ASU_10445
N
0.571
ANCCEY_08672
Ancylostoma ceylanicum
ANCCEY_08672
N
0.571
DICVIV_03175
Dictyocaulus viviparus
DICVIV_03175
N
0.571
ALUE_0001851001
Ascaris lumbricoides
ALUE_0001851001
N
0.571
MDOA001488
Musca domestica
MDOA001488
I
0.571
HHAL005242-PA
Halyomorpha halys
HHAL005242-PA
I
0.571
TELCIR_11967
Teladorsagia circumcincta
TELCIR_11967
N
0.571
ACAC_0000409101
Angiostrongylus cantonensis
ACAC_0000409101
N
0.571
ACOC_0001323101
Angiostrongylus costaricensis
ACOC_0001323101
N
0.571
ANCCAN_29654
Ancylostoma caninum
ANCCAN_29654
N
0.571
PEQ_0000413701
Parascaris equorum
PEQ_0000413701
N
0.571
Y73E7A.1
Caenorhabditis elegans
WBGene00022268
N
0.571
HCOI00594600
Haemonchus contortus
HCOI00594600
N
0.571
NV13812
Nasonia vitripennis
NV13812
I
0.571
KGM_20190
Danaus plexippus
KGM_20190
I
0.571
NBR_0000605501
Nippostrongylus brasiliensis
NBR_0000605501
N
0.571
HPLM_0000348901
Haemonchus placei
HPLM_0000348901
N
0.571
NECAME_12352
Necator americanus
NECAME_12352
N
0.571
HPBE_0001252601
Heligmosomoides bakeri
HPBE_0001252601
N
0.571
CRE03905
Caenorhabditis remanei
CRE03905
N
0.565
CBN09380
Caenorhabditis brenneri
CBN09380
N
0.565
CJA05209
Caenorhabditis japonica
CJA05209
N
0.565
HelroG66455
Helobdella robusta
HelroG66455
N
0.564
DAPPUDRAFT_303074
Daphnia pulex
DAPPUDRAFT_303074
N
0.561
HMEL009197
Heliconius melpomene
HMEL009197
N
0.555
ASIS023527
Anopheles sinensis
ASIS023527
N
0.554
AMIN003838
Anopheles minimus
AMIN003838
N
0.554
AARA009694
Anopheles arabiensis
AARA009694
N
0.554
AMEM002948
Anopheles merus
AMEM002948
N
0.554
AQUA009805
Anopheles quadriannulatus
AQUA009805
N
0.554
AFUN011346
Anopheles funestus
AFUN011346
N
0.554
ACUA003510
Anopheles culicifacies
ACUA003510
N
0.554
AGAP004110
Anopheles gambiae
AGAP004110
N
0.554
ACHR002403
Anopheles christyi
ACHR002403
N
0.554
AMEC005071
Anopheles melas
AMEC005071
N
0.554
ASTEI04275
Anopheles stephensi
ASTEI04275
N
0.554
AFAF018499
Anopheles farauti
AFAF018499
N
0.554
AEPI008570
Anopheles epiroticus
AEPI008570
N
0.554
ACOM033320
Anopheles coluzzii
ACOM033320
N
0.554
ACYPI003297
Acyrthosiphon pisum
ACYPI003297
I
0.553
AAEL008417
Aedes aegypti
AAEL008417
N
0.547
NEMVEDRAFT_v1g201358
Nematostella vectensis
NEMVEDRAFT_v1g201358
I
0.541
Cflo_06133--XP_394373.1_APIME
Camponotus floridanus
Cflo_06133--XP_394373.1_APIME
I
0.541
TCLT_0001081001
Thelazia callipaeda
TCLT_0001081001
N
0.541
GB50764
Apis mellifera
GB50764
I
0.541
GUITHDRAFT_162866
Guillardia theta
GUITHDRAFT_162866
N
0.540
maker-nMf.1.1.scaf18285-snap-gene-0.4
Meloidogyne floridensis
maker-nMf.1.1.scaf18285-snap-gene-0.4
N
0.535
MhA1_Contig1250.frz3.gene10
Meloidogyne hapla
MhA1_Contig1250.frz3.gene10
N
0.535
Ocbimv22013575m.g
Octopus bimaculoides
Ocbimv22013575m.g
I
0.535
Hsal_04778--XP_394373.1_APIME
Harpegnathos saltator
Hsal_04778--XP_394373.1_APIME
I
0.535
ACEP12759
Atta cephalotes
ACEP12759
I
0.535
SINV12391
Solenopsis invicta
SINV12391
I
0.535
Minc12734
Meloidogyne incognita
Minc12734
N
0.535
ISCW011313
Ixodes scapularis
ISCW011313
N
0.532
CGI_10019404
Crassostrea gigas
CGI_10019404
N
0.530
BGIBMGA013514
Bombyx mori
BGIBMGA013514
N
0.526
PHUM036320
Pediculus humanus
PHUM036320
N
0.525
AMAM021723
Anopheles maculatus
AMAM021723
N
0.509
estExt_fgenesh2_pm.C_3240002
Branchiostoma floridae
estExt_fgenesh2_pm.C_3240002
N
0.495
estExt_fgenesh2_pg.C_1070085
Branchiostoma floridae
estExt_fgenesh2_pg.C_1070085
N
0.495
GK13574
Drosophila willistoni
FBgn0215582
I
0.490
GH18160
Drosophila grimshawi
FBgn0125628
I
0.490
GE25578
Drosophila yakuba
FBgn0242642
I
0.490
SPU_001776
Strongylocentrotus purpuratus
SPU_001776
N
0.490
LotgiG126557
Lottia gigantea
LotgiG126557
N
0.487
CLEC002888
Cimex lectularius
CLEC002888
N
0.484
fgenesh1_pm.2_#_13
Coccomyxa subellipsoidea C169
fgenesh1_pm.2_#_13
N
0.483
fgeneshCV_pg.C_scaffold_2000022
Chlorella vulgaris
fgeneshCV_pg.C_scaffold_2000022
N
0.483
SBAD_0000307901
Soboliphyme baturini
SBAD_0000307901
N
0.480
LCUP006380
Lucilia cuprina
LCUP006380
N
0.475
ML11467a
Mnemiopsis leidyi
ML11467a
N
0.470
DILT_0001250601
Diphyllobothrium latum
DILT_0001250601
N
0.454
TGME49_037260
Toxoplasma gondii
TGME49_037260
N
0.442
ccdc124
Oryzias latipes
ENSORLG00000015728
N
0.440
ETH_00032160
Eimeria tenella
ETH_00032160
N
0.439
TC004658
Tribolium castaneum
TC004658
N
0.434
TRE_0001918901
Trichobilharzia regenti
TRE_0001918901
N
0.430
Sjc_0011880
Schistosoma japonicum
Sjc_0011880
N
0.417
D918_07944
Trichuris suis
D918_07944
N
0.417