CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Sjc_0011880
(
Schistosoma japonicum
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
Sjc_0011880
T334972_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CPRT0000001105
Sox
111
163
EKRLKAAYQAFEERMMPHLKAENPSMRHSQLKQLLFKMFQTSPENPKNHQNAC
Links
Other
Sox
family TFs
Other
Schistosoma japonicum
TFs
110 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SMRZ_0002114501
Schistosoma margrebowiei
SMRZ_0002114501
N
0.734
Smp_004360
Schistosoma mansoni
Smp_004360
N
0.728
A_06553
Schistosoma haematobium
A_06553
N
0.728
TRE_0001918901
Trichobilharzia regenti
TRE_0001918901
N
0.723
ECPE_0001800901
Echinostoma caproni
ECPE_0001800901
N
0.571
NV13812
Nasonia vitripennis
NV13812
I
0.567
DILT_0001250601
Diphyllobothrium latum
DILT_0001250601
N
0.559
KGM_20190
Danaus plexippus
KGM_20190
I
0.549
PEQ_0000413701
Parascaris equorum
PEQ_0000413701
N
0.548
ALUE_0001851001
Ascaris lumbricoides
ALUE_0001851001
N
0.548
ASU_10445
Ascaris suum
ASU_10445
N
0.548
NEMVEDRAFT_v1g201358
Nematostella vectensis
NEMVEDRAFT_v1g201358
I
0.548
MCINX012524
Melitaea cinxia
MCINX012524
I
0.543
CapteG224864
Capitella teleta
CapteG224864
I
0.543
HHAL005242-PA
Halyomorpha halys
HHAL005242-PA
I
0.538
T265_00523
Opisthorchis viverrini
T265_00523
N
0.537
HelroG66455
Helobdella robusta
HelroG66455
N
0.536
Ocbimv22013575m.g
Octopus bimaculoides
Ocbimv22013575m.g
I
0.535
GB50764
Apis mellifera
GB50764
I
0.527
ISCW011313
Ixodes scapularis
ISCW011313
N
0.526
SMU15012775
Schmidtea mediterranea
SMU15012775
N
0.521
SINV12391
Solenopsis invicta
SINV12391
I
0.520
Hsal_04778--XP_394373.1_APIME
Harpegnathos saltator
Hsal_04778--XP_394373.1_APIME
I
0.520
ACEP12759
Atta cephalotes
ACEP12759
I
0.520
MDOA001488
Musca domestica
MDOA001488
I
0.514
ANCCEY_08672
Ancylostoma ceylanicum
ANCCEY_08672
N
0.513
ACAC_0000409101
Angiostrongylus cantonensis
ACAC_0000409101
N
0.513
tetur18g00680
Tetranychus urticae
tetur18g00680
I
0.513
ACOC_0001323101
Angiostrongylus costaricensis
ACOC_0001323101
N
0.513
DICVIV_03175
Dictyocaulus viviparus
DICVIV_03175
N
0.513
ANCCAN_29654
Ancylostoma caninum
ANCCAN_29654
N
0.513
HPLM_0000348901
Haemonchus placei
HPLM_0000348901
N
0.511
TELCIR_11967
Teladorsagia circumcincta
TELCIR_11967
N
0.511
HCOI00594600
Haemonchus contortus
HCOI00594600
N
0.511
HPBE_0001252601
Heligmosomoides bakeri
HPBE_0001252601
N
0.511
NBR_0000605501
Nippostrongylus brasiliensis
NBR_0000605501
N
0.511
Y73E7A.1
Caenorhabditis elegans
WBGene00022268
N
0.509
EmuJ_000938500
Echinococcus multilocularis
EmuJ_000938500
N
0.507
EmuJ_000916900
Echinococcus multilocularis
EmuJ_000916900
N
0.507
TASK_0000467701
Taenia asiatica
TASK_0000467701
N
0.507
TsM_000545400
Taenia solium
TsM_000545400
N
0.507
ACYPI003297
Acyrthosiphon pisum
ACYPI003297
I
0.505
HMEL009197
Heliconius melpomene
HMEL009197
N
0.504
BGIBMGA013514
Bombyx mori
BGIBMGA013514
N
0.504
CRE03905
Caenorhabditis remanei
CRE03905
N
0.503
CBN09380
Caenorhabditis brenneri
CBN09380
N
0.503
CJA05209
Caenorhabditis japonica
CJA05209
N
0.503
OESDEN_05486
Oesophagostomum dentatum
OESDEN_05486
N
0.502
NECAME_12352
Necator americanus
NECAME_12352
N
0.502
CLEC002888
Cimex lectularius
CLEC002888
N
0.501
SBAD_0000307901
Soboliphyme baturini
SBAD_0000307901
N
0.498
Cflo_06133--XP_394373.1_APIME
Camponotus floridanus
Cflo_06133--XP_394373.1_APIME
I
0.498
DAPPUDRAFT_303074
Daphnia pulex
DAPPUDRAFT_303074
N
0.492
PHUM036320
Pediculus humanus
PHUM036320
N
0.486
SPU_001776
Strongylocentrotus purpuratus
SPU_001776
N
0.485
GE25578
Drosophila yakuba
FBgn0242642
I
0.484
GH18160
Drosophila grimshawi
FBgn0125628
I
0.484
GK13574
Drosophila willistoni
FBgn0215582
I
0.484
GPUH_0000676401
Gongylonema pulchrum
GPUH_0000676401
N
0.483
maker-nMf.1.1.scaf18285-snap-gene-0.4
Meloidogyne floridensis
maker-nMf.1.1.scaf18285-snap-gene-0.4
N
0.483
Minc12734
Meloidogyne incognita
Minc12734
N
0.483
TCLT_0001081001
Thelazia callipaeda
TCLT_0001081001
N
0.483
MhA1_Contig1250.frz3.gene10
Meloidogyne hapla
MhA1_Contig1250.frz3.gene10
N
0.483
CpipJ_CPIJ005084
Culex pipiens
CpipJ_CPIJ005084
N
0.480
CPIJ005084
Culex quinquefasciatus
CPIJ005084
N
0.480
HDID_0000279401
Hymenolepis diminuta
HDID_0000279401
N
0.474
RPRC009760
Rhodnius prolixus
RPRC009760
N
0.472
LCUP006380
Lucilia cuprina
LCUP006380
N
0.469
estExt_fgenesh2_pm.C_3240002
Branchiostoma floridae
estExt_fgenesh2_pm.C_3240002
N
0.467
estExt_fgenesh2_pg.C_1070085
Branchiostoma floridae
estExt_fgenesh2_pg.C_1070085
N
0.467
ACOM033320
Anopheles coluzzii
ACOM033320
N
0.466
AGAP004110
Anopheles gambiae
AGAP004110
N
0.466
ACHR002403
Anopheles christyi
ACHR002403
N
0.466
AARA009694
Anopheles arabiensis
AARA009694
N
0.466
AEPI008570
Anopheles epiroticus
AEPI008570
N
0.466
ACUA003510
Anopheles culicifacies
ACUA003510
N
0.466
AMEM002948
Anopheles merus
AMEM002948
N
0.466
ASTEI04275
Anopheles stephensi
ASTEI04275
N
0.466
AQUA009805
Anopheles quadriannulatus
AQUA009805
N
0.466
ASIS023527
Anopheles sinensis
ASIS023527
N
0.466
XP_002163918.1
Hydra magnipapillata
XP_002163918.1
I
0.460
AMEC005071
Anopheles melas
AMEC005071
N
0.459
PYU1_G003004
Pythium ultimum
PYU1_G003004
N
0.453
SPRG_06372
Saprolegnia parasitica
SPRG_06372
N
0.453
ALNC14_126360
Albugo laibachii
ALNC14_126360
N
0.453
maker-pir_contig_430-fgenesh-gene-0.3
Pythium irregulare
maker-pir_contig_430-fgenesh-gene-0.3
N
0.453
maker-piw_contig_1911-snap-gene-0.6
Pythium iwayamai
maker-piw_contig_1911-snap-gene-0.6
N
0.453
maker-pve_contig_105-snap-gene-0.29
Pythium vexans
maker-pve_contig_105-snap-gene-0.29
N
0.453
HNAJ_0000101901
Hymenolepis nana
HNAJ_0000101901
N
0.449
D917_07703
Trichinella nativa
D917_07703
N
0.447
EFV51436
Trichinella spiralis
EFV51436
N
0.447
TC004658
Tribolium castaneum
TC004658
N
0.444
Physo132366
Phytophthora sojae
Physo132366
N
0.443
fgenesh_scip_prom.46568.2049
Phytophthora kernoviae
fgenesh_scip_prom.46568.2049
N
0.443
F443_19335
Phytophthora parasitica
F443_19335
N
0.443
fgenesh1_pg.C_scaffold_73784000001
Phytophthora capsici
fgenesh1_pg.C_scaffold_73784000001
N
0.443
estExt_fgenesh1_kg.C_80399
Phytophthora capsici
estExt_fgenesh1_kg.C_80399
N
0.443
LotgiG126557
Lottia gigantea
LotgiG126557
N
0.440
GLOINDRAFT_342259
Rhizophagus irregularis
GLOINDRAFT_342259
I
0.436
CGI_10019404
Crassostrea gigas
CGI_10019404
N
0.436
ADAC009894
Anopheles darlingi
ADAC009894
N
0.434
AMAG_02504
Allomyces macrogynus
AMAG_02504
I
0.434
ADIR002941
Anopheles dirus
ADIR002941
N
0.434
AMIN003838
Anopheles minimus
AMIN003838
N
0.434
AFUN011346
Anopheles funestus
AFUN011346
N
0.434
AATE006267
Anopheles atroparvus
AATE006267
N
0.434
AALB007196
Anopheles albimanus
AALB007196
N
0.434
AFAF018499
Anopheles farauti
AFAF018499
N
0.434
Phyra74523
Phytophthora ramorum
Phyra74523
N
0.417
fgenesh_scip_prom.28083.7036
Phytophthora lateralis
fgenesh_scip_prom.28083.7036
N
0.417