Traes_1AS_3FCB35E65 (Triticum aestivum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Traes_1AS_3FCB35E65 T332970_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NCU02819
M02490_2.00 		Neurospora crassa
NNHNNNNNRN
NYNNNNNDNN		 PBM
Weirauch et al.(2014)
pTH9672 		0.426 0.406
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Traes_1AS_3FCB35E65.1 Sox 505 573

Links

Other Sox family TFs
Other Triticum aestivum TFs

99 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_29723 Aegilops tauschii F775_29723 I 0.741
Traes_1BS_15F9D276D Triticum aestivum Traes_1BS_15F9D276D I 0.741
Traes_1DS_C7F1E9F38 Triticum aestivum Traes_1DS_C7F1E9F38 I 0.741
MLOC_27773 Hordeum vulgare MLOC_27773 I 0.732
OBART05G05520 Oryza barthii OBART05G05520 N 0.696
LPERR05G04880 Leersia perrieri LPERR05G04880 N 0.696
OGLUM05G05400 Oryza glumaepatula OGLUM05G05400 N 0.696
OB05G15230 Oryza brachyantha OB05G15230 N 0.696
OPUNC05G05150 Oryza punctata OPUNC05G05150 N 0.696
SSRP1-B Oryza sativa OS05G0182600 N 0.696
ORUFI05G05850 Oryza rufipogon ORUFI05G05850 N 0.696
ORGLA05G0049600 Oryza glaberrima ORGLA05G0049600 N 0.696
OMERI05G05210 Oryza meridionalis OMERI05G05210 N 0.696
OLONG_012679 Oryza longistaminata OLONG_012679 N 0.696
ONIVA05G05990 Oryza nivara ONIVA05G05990 N 0.696
BGIOSGA019295 Oryza indica BGIOSGA019295 N 0.696
BRADI2G33580 Brachypodium distachyon BRADI2G33580 N 0.686
Pavir.Ca01033 Panicum virgatum Pavir.Ca01033 N 0.654
Pavir.J20558 Panicum virgatum Pavir.J20558 N 0.654
Si021575m.g Setaria italica Si021575m.g N 0.648
GRMZM5G842484 Zea mays GRMZM5G842484 N 0.647
Sb09g005650 Sorghum bicolor Sb09g005650 N 0.647
Pavir.J08546 Panicum virgatum Pavir.J08546 N 0.637
Pavir.Ea00282 Panicum virgatum Pavir.Ea00282 N 0.637
Si000646m.g Setaria italica Si000646m.g N 0.637
Sb03g003450 Sorghum bicolor Sb03g003450 N 0.637
GRMZM2G032252 Zea mays GRMZM2G032252 N 0.637
LPERR01G05200 Leersia perrieri LPERR01G05200 N 0.636
OB01G15440 Oryza brachyantha OB01G15440 N 0.636
OBART01G05540 Oryza barthii OBART01G05540 N 0.631
ORGLA01G0051500 Oryza glaberrima ORGLA01G0051500 N 0.631
BGIOSGA002908 Oryza indica BGIOSGA002908 N 0.631
ONIVA01G06280 Oryza nivara ONIVA01G06280 N 0.631
SSRP1-A Oryza sativa OS01G0184900 N 0.631
OLONG_023518 Oryza longistaminata OLONG_023518 N 0.631
OMERI01G05760 Oryza meridionalis OMERI01G05760 N 0.631
ORUFI01G05970 Oryza rufipogon ORUFI01G05970 N 0.631
OGLUM01G06010 Oryza glumaepatula OGLUM01G06010 N 0.631
Pavir.J10741 Panicum virgatum Pavir.J10741 N 0.592
Si024096m.g Setaria italica Si024096m.g N 0.590
Traes_3AS_AAAAD30B5 Triticum aestivum Traes_3AS_AAAAD30B5 N 0.586
TRAES3BF096800150CFD_g Triticum aestivum TRAES3BF096800150CFD_g N 0.586
F775_28104 Aegilops tauschii F775_28104 N 0.586
TRIUR3_14091 Triticum urartu TRIUR3_14091 N 0.586
OPUNC01G05380 Oryza punctata OPUNC01G05380 N 0.579
OPUNC02G20230 Oryza punctata OPUNC02G20230 N 0.579
MLOC_6673 Hordeum vulgare MLOC_6673 N 0.567
mgf024995m Mimulus guttatus mgf024995m I 0.505
SELMODRAFT_166865 Selaginella moellendorffii SELMODRAFT_166865 I 0.482
SELMODRAFT_159743 Selaginella moellendorffii SELMODRAFT_159743 I 0.482
MBM_02410 Marssonina brunnea MBM_02410 I 0.465
M7I_1578 Glarea lozoyensis M7I_1578 I 0.458
SBOR_0403 Sclerotinia borealis SBOR_0403 I 0.453
SS1G_04584 Sclerotinia sclerotiorum SS1G_04584 I 0.453
PV11_09703 Exophiala sideris PV11_09703 I 0.451
PV05_09944 Exophiala xenobiotica PV05_09944 I 0.451
PV06_04154 Exophiala oligosperma PV06_04154 I 0.451
Z518_04911 Rhinocladiella mackenziei Z518_04911 I 0.451
PV08_04655 Exophiala spinifera PV08_04655 I 0.451
G647_10093 Cladophialophora carrionii G647_10093 I 0.451
HMPREF1120_00213 Exophiala dermatitidis HMPREF1120_00213 I 0.451
A1O7_01726 Cladophialophora yegresii A1O7_01726 I 0.451
A1O1_01197 Capronia coronata A1O1_01197 I 0.451
A1O3_08778 Capronia epimyces A1O3_08778 I 0.451
CPUR_04901 Claviceps purpurea CPUR_04901 I 0.450
MTR_5g082570 Medicago truncatula MTR_5g082570 I 0.438
OIDMADRAFT_143526 Oidiodendron maius OIDMADRAFT_143526 I 0.438
PODANS_1_7390 Podospora anserina PODANS_1_7390 I 0.436
GSMUA_Achr2G19630_001 Musa acuminata GSMUA_Achr2G19630_001 I 0.435
AAEL011425 Aedes aegypti AAEL011425 I 0.433
Bcin01g08840 Botrytis cinerea Bcin01g08840 I 0.433
V499_08602 Pseudogymnoascus pannorum V499_08602 I 0.432
HMGB2 Ochotona princeps ENSOPRG00000010124 I 0.427
NCU02819 Neurospora crassa NCU02819 D 0.426
THITE_2121767 Thielavia terrestris THITE_2121767 I 0.426
GMDG_05273 Pseudogymnoascus destructans GMDG_05273 I 0.426
SMAC_00615 Sordaria macrospora SMAC_00615 I 0.426
NEUTE1DRAFT_106544 Neurospora tetrasperma NEUTE1DRAFT_106544 I 0.426
estExt_fgenesh3_kg.C_40082 Neurospora discreta estExt_fgenesh3_kg.C_40082 I 0.426
Z517_02317 Fonsecaea pedrosoi Z517_02317 I 0.424
Z519_04692 Cladophialophora bantiana Z519_04692 I 0.424
A1O5_06047 Cladophialophora psammophila A1O5_06047 I 0.424
PV04_00198 Capronia semiimmersa PV04_00198 I 0.424
PV07_09313 Cladophialophora immunda PV07_09313 I 0.424
PV10_01993 Exophiala mesophila PV10_01993 I 0.424
BGHDH14_bgh04339 Blumeria graminis BGHDH14_bgh04339 I 0.421
MYCTH_2294934 Myceliophthora thermophila MYCTH_2294934 I 0.420
ENSOGAG00000026034 Otolemur garnettii ENSOGAG00000026034 I 0.420
cgd2_2120 Cryptosporidium parvum cgd2_2120 N 0.420
CTHT_0053790 Chaetomium thermophilum CTHT_0053790 I 0.420
ENSOGAG00000031524 Otolemur garnettii ENSOGAG00000031524 I 0.420
Chro.20230 Cryptosporidium hominis Chro.20230 N 0.420
ENSMMUG00000031258 Macaca mulatta ENSMMUG00000031258 I 0.419
A1O9_00742 Exophiala aquamarina A1O9_00742 I 0.419
SNAPOd2T00000181001 Oikopleura dioica SNAPOd2T00000181001 N 0.416
ACHR003271 Anopheles christyi ACHR003271 I 0.416
BRADI2G05430 Brachypodium distachyon BRADI2G05430 N 0.416
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.415
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.415