CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ha01933
(
Panicum virgatum
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03106 (WRKY)
IPR003657
Pavir.Ha01933
T356783_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WRKY38
M00901_2.00
Arabidopsis thaliana
NNRGTCAACBN
NVGTTGACYNN
PBM
Franco-Zorrilla et al.(2014)
WRKY38
0.815
0.593
WRKY62
M02561_2.00
Arabidopsis thaliana
TRGTCAAM
KTTGACYA
PBM
Weirauch et al.(2014)
pTH8246
0.813
0.508
For this family, TFs with SR scores >
0.808
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ha01933.1.p
WRKY
134
199
YDGRQWRKYGQKHINKAKHPRSYYRCTYSKEQDCKATKTVQQQDECTGTDNPVMYTVIYHGQHTCK
Links
Other
WRKY
family TFs
Other
Panicum virgatum
TFs
239 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.J39511
Panicum virgatum
Pavir.J39511
I
0.903
Pavir.Cb02194
Panicum virgatum
Pavir.Cb02194
I
0.900
Si010764m.g
Setaria italica
Si010764m.g
N
0.893
Sb08g002560
Sorghum bicolor
Sb08g002560
N
0.884
Pavir.J34713
Panicum virgatum
Pavir.J34713
N
0.884
Si019098m.g
Setaria italica
Si019098m.g
N
0.883
OPUNC12G00990
Oryza punctata
OPUNC12G00990
N
0.863
OPUNC11G00980
Oryza punctata
OPUNC11G00980
N
0.863
LPERR11G00970
Leersia perrieri
LPERR11G00970
N
0.863
LPERR12G01080
Leersia perrieri
LPERR12G01080
N
0.863
OBART12G00850
Oryza barthii
OBART12G00850
N
0.860
ORGLA12G0007600
Oryza glaberrima
ORGLA12G0007600
N
0.860
OS12G0116700
Oryza sativa
OS12G0116700
N
0.860
BGIOSGA036756
Oryza indica
BGIOSGA036756
N
0.860
OB11G10760
Oryza brachyantha
OB11G10760
N
0.859
OMERI11G01570
Oryza meridionalis
OMERI11G01570
N
0.859
OS11G0117500
Oryza sativa
OS11G0117500
N
0.859
OB12G11030
Oryza brachyantha
OB12G11030
N
0.859
GRMZM2G169564
Zea mays
GRMZM2G169564
N
0.857
ONIVA11G01240
Oryza nivara
ONIVA11G01240
I
0.851
ORGLA11G0202000
Oryza glaberrima
ORGLA11G0202000
I
0.851
OGLUM11G00870
Oryza glumaepatula
OGLUM11G00870
I
0.851
OBART11G01110
Oryza barthii
OBART11G01110
I
0.851
BGIOSGA034612
Oryza indica
BGIOSGA034612
I
0.851
TRIUR3_26571
Triticum urartu
TRIUR3_26571
N
0.847
F775_02479
Aegilops tauschii
F775_02479
N
0.847
BRADI4G44370
Brachypodium distachyon
BRADI4G44370
N
0.843
Sb05g001220
Sorghum bicolor
Sb05g001220
N
0.842
BRADI4G44360
Brachypodium distachyon
BRADI4G44360
I
0.838
OBART05G08130
Oryza barthii
OBART05G08130
I
0.835
OLONG_019907
Oryza longistaminata
OLONG_019907
I
0.835
OGLUM05G08540
Oryza glumaepatula
OGLUM05G08540
I
0.835
ONIVA05G08650
Oryza nivara
ONIVA05G08650
I
0.835
OPUNC05G07410
Oryza punctata
OPUNC05G07410
I
0.835
ORUFI05G08750
Oryza rufipogon
ORUFI05G08750
I
0.835
PDK_20s1314561g002
Phoenix dactylifera
PDK_20s1314561g002
I
0.835
ORGLA05G0070000
Oryza glaberrima
ORGLA05G0070000
I
0.835
BGIOSGA017556
Oryza indica
BGIOSGA017556
I
0.835
OB05G17240
Oryza brachyantha
OB05G17240
I
0.834
Si027876m.g
Setaria italica
Si027876m.g
N
0.834
Traes_5AL_69A969FF4
Triticum aestivum
Traes_5AL_69A969FF4
N
0.834
F775_02480
Aegilops tauschii
F775_02480
N
0.834
Pavir.Ca00084
Panicum virgatum
Pavir.Ca00084
N
0.833
LPERR05G06630
Leersia perrieri
LPERR05G06630
I
0.833
Si028202m.g
Setaria italica
Si028202m.g
I
0.832
BRADI4G44350
Brachypodium distachyon
BRADI4G44350
I
0.832
Pavir.J09582
Panicum virgatum
Pavir.J09582
N
0.832
GRMZM2G400559
Zea mays
GRMZM2G400559
N
0.831
Si025181m.g
Setaria italica
Si025181m.g
I
0.831
Pavir.Ba00227
Panicum virgatum
Pavir.Ba00227
I
0.831
LPERR07G23280
Leersia perrieri
LPERR07G23280
I
0.830
TRIUR3_05298
Triticum urartu
TRIUR3_05298
I
0.830
OB07G31890
Oryza brachyantha
OB07G31890
I
0.830
OPUNC07G24890
Oryza punctata
OPUNC07G24890
I
0.830
GSMUA_Achr5G08580_001
Musa acuminata
GSMUA_Achr5G08580_001
I
0.830
OGLUM07G26470
Oryza glumaepatula
OGLUM07G26470
I
0.829
ORGLA07G0207800
Oryza glaberrima
ORGLA07G0207800
I
0.829
ORUFI07G27440
Oryza rufipogon
ORUFI07G27440
I
0.829
ONIVA07G26140
Oryza nivara
ONIVA07G26140
I
0.829
OBART07G26430
Oryza barthii
OBART07G26430
I
0.829
BGIOSGA023706
Oryza indica
BGIOSGA023706
I
0.829
OMERI07G23060
Oryza meridionalis
OMERI07G23060
I
0.829
Traes_5DL_5C93510D5
Triticum aestivum
Traes_5DL_5C93510D5
I
0.828
OLONG_008209
Oryza longistaminata
OLONG_008209
I
0.828
F775_27484
Aegilops tauschii
F775_27484
I
0.828
GSMUA_Achr8G25110_001
Musa acuminata
GSMUA_Achr8G25110_001
I
0.828
OS07G0680400
Oryza sativa
OS07G0680400
I
0.827
F775_00757
Aegilops tauschii
F775_00757
I
0.825
MLOC_52504
Hordeum vulgare
MLOC_52504
I
0.824
Sb08g002570
Sorghum bicolor
Sb08g002570
N
0.824
Traes_5BL_F853EA802
Triticum aestivum
Traes_5BL_F853EA802
I
0.824
Si027360m.g
Setaria italica
Si027360m.g
N
0.824
OGLUM11G00850
Oryza glumaepatula
OGLUM11G00850
I
0.824
F775_21933
Aegilops tauschii
F775_21933
I
0.824
MLOC_71897
Hordeum vulgare
MLOC_71897
I
0.823
ORGLA12G0007500
Oryza glaberrima
ORGLA12G0007500
N
0.823
F775_04232
Aegilops tauschii
F775_04232
N
0.822
Si010832m.g
Setaria italica
Si010832m.g
N
0.822
Pavir.Ca00459
Panicum virgatum
Pavir.Ca00459
I
0.821
BRADI4G28280
Brachypodium distachyon
BRADI4G28280
I
0.821
Traes_2BS_B65714572
Triticum aestivum
Traes_2BS_B65714572
I
0.821
ONIVA11G01230
Oryza nivara
ONIVA11G01230
N
0.820
OPUNC11G00970
Oryza punctata
OPUNC11G00970
N
0.820
ONIVA11G01050
Oryza nivara
ONIVA11G01050
N
0.820
BGIOSGA034613
Oryza indica
BGIOSGA034613
N
0.820
F775_25840
Aegilops tauschii
F775_25840
I
0.820
BGIOSGA004705
Oryza indica
BGIOSGA004705
I
0.820
ONIVA01G40390
Oryza nivara
ONIVA01G40390
I
0.820
Carubv10022162m.g
Capsella rubella
Carubv10022162m.g
I
0.820
TRIUR3_30416
Triticum urartu
TRIUR3_30416
I
0.820
OPUNC12G00970
Oryza punctata
OPUNC12G00970
N
0.820
ORUFI01G38690
Oryza rufipogon
ORUFI01G38690
I
0.820
BGIOSGA036757
Oryza indica
BGIOSGA036757
N
0.820
OS01G0821600
Oryza sativa
OS01G0821600
I
0.820
OMERI11G01520
Oryza meridionalis
OMERI11G01520
N
0.820
Traes_5BL_0A3D332A8
Triticum aestivum
Traes_5BL_0A3D332A8
I
0.820
ORGLA11G0201900
Oryza glaberrima
ORGLA11G0201900
N
0.820
OS12G0116600
Oryza sativa
OS12G0116600
N
0.820
ORGLA01G0292200
Oryza glaberrima
ORGLA01G0292200
I
0.820
Traes_5DL_C93641E43
Triticum aestivum
Traes_5DL_C93641E43
I
0.820
TRIUR3_14306
Triticum urartu
TRIUR3_14306
I
0.820
OS11G0117400
Oryza sativa
OS11G0117400
N
0.820
OBART11G01100
Oryza barthii
OBART11G01100
N
0.820
OLONG_000636
Oryza longistaminata
OLONG_000636
I
0.820
OGLUM12G01400
Oryza glumaepatula
OGLUM12G01400
N
0.820
OGLUM01G39390
Oryza glumaepatula
OGLUM01G39390
I
0.820
OMERI01G32510
Oryza meridionalis
OMERI01G32510
I
0.820
F775_30853
Aegilops tauschii
F775_30853
I
0.820
OBART01G35380
Oryza barthii
OBART01G35380
I
0.820
MLOC_45055
Hordeum vulgare
MLOC_45055
I
0.819
Traes_2AS_6269D889E
Triticum aestivum
Traes_2AS_6269D889E
I
0.819
Sb02g043030
Sorghum bicolor
Sb02g043030
I
0.817
MLOC_78461
Hordeum vulgare
MLOC_78461
I
0.817
BRADI1G17660
Brachypodium distachyon
BRADI1G17660
I
0.817
Sb07g019400
Sorghum bicolor
Sb07g019400
I
0.817
PRUPE_ppa008573mg
Prunus persica
PRUPE_ppa008573mg
I
0.817
GRMZM2G441031
Zea mays
GRMZM2G441031
I
0.817
TRIUR3_01447
Triticum urartu
TRIUR3_01447
N
0.817
LPERR11G00960
Leersia perrieri
LPERR11G00960
I
0.817
MDP0000146360
Malus domestica
MDP0000146360
I
0.817
MDP0000299114
Malus domestica
MDP0000299114
I
0.817
TRIUR3_01445
Triticum urartu
TRIUR3_01445
N
0.816
GRMZM2G025895
Zea mays
GRMZM2G025895
I
0.816
Si030395m.g
Setaria italica
Si030395m.g
I
0.816
BRADI3G34850
Brachypodium distachyon
BRADI3G34850
I
0.816
GRMZM2G324999
Zea mays
GRMZM2G324999
I
0.816
GSMUA_Achr7G22020_001
Musa acuminata
GSMUA_Achr7G22020_001
I
0.816
GRMZM2G061408
Zea mays
GRMZM2G061408
I
0.816
TRIUR3_06813
Triticum urartu
TRIUR3_06813
I
0.816
Carubv10012720m.g
Capsella rubella
Carubv10012720m.g
I
0.816
F775_15928
Aegilops tauschii
F775_15928
I
0.816
Cagra.0255s0014
Capsella grandiflora
Cagra.0255s0014
I
0.816
AC205562.3_FG002
Zea mays
AC205562.3_FG002
I
0.816
Carubv10021420m.g
Capsella rubella
Carubv10021420m.g
I
0.815
Si002401m.g
Setaria italica
Si002401m.g
I
0.815
WRKY38
Arabidopsis lyrata
scaffold_602308.1
I
0.815
WRKY38
Arabidopsis thaliana
AT5G22570
D
0.815
Cagra.15225s0001
Capsella grandiflora
Cagra.15225s0001
I
0.815
GLYMA01G43420
Glycine max
GLYMA01G43420
I
0.814
LPERR05G16170
Leersia perrieri
LPERR05G16170
I
0.814
PGSC0003DMG400019884
Solanum tuberosum
PGSC0003DMG400019884
I
0.814
LPERR01G30500
Leersia perrieri
LPERR01G30500
I
0.814
BRADI4G44342
Brachypodium distachyon
BRADI4G44342
N
0.814
Pavir.Ea03258
Panicum virgatum
Pavir.Ea03258
I
0.814
PDK_20s1535141g002
Phoenix dactylifera
PDK_20s1535141g002
I
0.813
WRKY62
Arabidopsis lyrata
Al_scaffold_0006_13
I
0.813
Pavir.J37854
Panicum virgatum
Pavir.J37854
I
0.813
BRADI2G53520
Brachypodium distachyon
BRADI2G53520
I
0.813
Pavir.Fa01520
Panicum virgatum
Pavir.Fa01520
I
0.813
LPERR01G30490
Leersia perrieri
LPERR01G30490
I
0.813
Traes_4AS_0DA136E0E
Triticum aestivum
Traes_4AS_0DA136E0E
I
0.813
Solyc10g009550.2
Solanum lycopersicum
Solyc10g009550.2
I
0.813
WRKY62
Arabidopsis thaliana
AT5G01900
D
0.813
Bra028918
Brassica rapa
Bra028918
I
0.813
F775_07376
Aegilops tauschii
F775_07376
I
0.813
MDP0000315045
Malus domestica
MDP0000315045
I
0.812
OB01G44170
Oryza brachyantha
OB01G44170
I
0.812
OPUNC05G17980
Oryza punctata
OPUNC05G17980
I
0.812
Bostr.6251s0160
Boechera stricta
Bostr.6251s0160
I
0.812
Pm024064
Prunus mume
Pm024064
I
0.812
Si015433m.g
Setaria italica
Si015433m.g
I
0.812
MLOC_74606
Hordeum vulgare
MLOC_74606
I
0.812
Pavir.Eb03563
Panicum virgatum
Pavir.Eb03563
I
0.812
Thhalv10014700m.g
Eutrema salsugineum
Thhalv10014700m.g
I
0.812
PK10616.1
Cannabis sativa
PK10616.1
I
0.812
OGLUM07G10380
Oryza glumaepatula
OGLUM07G10380
I
0.811
F775_23296
Aegilops tauschii
F775_23296
N
0.811
ORGLA08G0116200
Oryza glaberrima
ORGLA08G0116200
I
0.811
VIT_08s0058g01390
Vitis vinifera
VIT_08s0058g01390
I
0.811
OMERI08G11390
Oryza meridionalis
OMERI08G11390
I
0.811
Bostr.26959s0262
Boechera stricta
Bostr.26959s0262
I
0.811
BGIOSGA040489
Oryza indica
BGIOSGA040489
I
0.811
OS08G0386200
Oryza sativa
OS08G0386200
I
0.811
ONIVA08G13920
Oryza nivara
ONIVA08G13920
I
0.811
ORUFI08G15010
Oryza rufipogon
ORUFI08G15010
I
0.811
OGLUM09G06630
Oryza glumaepatula
OGLUM09G06630
I
0.810
PGSC0003DMG400000211
Solanum tuberosum
PGSC0003DMG400000211
I
0.810
OMERI05G18260
Oryza meridionalis
OMERI05G18260
I
0.810
mgf006355m
Mimulus guttatus
mgf006355m
I
0.810
BRADI2G53510
Brachypodium distachyon
BRADI2G53510
I
0.810
Sb05g001200
Sorghum bicolor
Sb05g001200
N
0.810
mgf015087m
Mimulus guttatus
mgf015087m
I
0.810
OMERI09G04750
Oryza meridionalis
OMERI09G04750
I
0.810
OPUNC01G34300
Oryza punctata
OPUNC01G34300
I
0.810
LPERR09G04330
Leersia perrieri
LPERR09G04330
I
0.810
Solyc01g095630.2
Solanum lycopersicum
Solyc01g095630.2
I
0.810
OBART09G06020
Oryza barthii
OBART09G06020
I
0.810
Sb03g038210
Sorghum bicolor
Sb03g038210
I
0.810
Pavir.Bb02088
Panicum virgatum
Pavir.Bb02088
I
0.810
Pavir.Ba02545
Panicum virgatum
Pavir.Ba02545
I
0.810
Traes_3DS_9A02CF31D
Triticum aestivum
Traes_3DS_9A02CF31D
I
0.810
OBART05G20340
Oryza barthii
OBART05G20340
I
0.810
OMERI05G18170
Oryza meridionalis
OMERI05G18170
I
0.809
Cla004301
Citrullus lanatus
Cla004301
I
0.809
Carubv10021860m.g
Capsella rubella
Carubv10021860m.g
I
0.809
VIT_02s0025g01280
Vitis vinifera
VIT_02s0025g01280
I
0.809
ONIVA09G05410
Oryza nivara
ONIVA09G05410
I
0.809
WRKY67
Arabidopsis thaliana
AT1G66550
I
0.809
OGLUM05G21420
Oryza glumaepatula
OGLUM05G21420
I
0.809
ONIVA05G21440
Oryza nivara
ONIVA05G21440
I
0.809
TRIUR3_17401
Triticum urartu
TRIUR3_17401
I
0.809
LPERR12G01070
Leersia perrieri
LPERR12G01070
I
0.809
TRAES3BF005100010CFD_g
Triticum aestivum
TRAES3BF005100010CFD_g
I
0.809
F775_03184
Aegilops tauschii
F775_03184
I
0.809
SELMODRAFT_29703
Selaginella moellendorffii
SELMODRAFT_29703
I
0.809
ORUFI09G06720
Oryza rufipogon
ORUFI09G06720
I
0.809
TRAES3BF001300030CFD_g
Triticum aestivum
TRAES3BF001300030CFD_g
I
0.809
ORUFI05G21560
Oryza rufipogon
ORUFI05G21560
I
0.809
Solyc08g008280.2
Solanum lycopersicum
Solyc08g008280.2
I
0.809
MTR_8g099350
Medicago truncatula
MTR_8g099350
I
0.809
GRMZM2G059562
Zea mays
GRMZM2G059562
I
0.809
SELMODRAFT_29702
Selaginella moellendorffii
SELMODRAFT_29702
I
0.809
OS09G0334500
Oryza sativa
OS09G0334500
I
0.809
Sb02g022290
Sorghum bicolor
Sb02g022290
I
0.809
PGSC0003DMG400005835
Solanum tuberosum
PGSC0003DMG400005835
I
0.809
BGIOSGA030346
Oryza indica
BGIOSGA030346
I
0.809
BGIOSGA030535
Oryza indica
BGIOSGA030535
I
0.809
ORGLA05G0177200
Oryza glaberrima
ORGLA05G0177200
I
0.809
OS05G0478400
Oryza sativa
OS05G0478400
I
0.809
OB11G27340
Oryza brachyantha
OB11G27340
I
0.809
Thhalv10004616m.g
Eutrema salsugineum
Thhalv10004616m.g
I
0.808
ONIVA01G40380
Oryza nivara
ONIVA01G40380
N
0.808
PDK_20s1519811g001
Phoenix dactylifera
PDK_20s1519811g001
I
0.808
GSMUA_Achr5G07490_001
Musa acuminata
GSMUA_Achr5G07490_001
I
0.808
BGIOSGA000583
Oryza indica
BGIOSGA000583
N
0.808
MDP0000754989
Malus domestica
MDP0000754989
I
0.808
OGLUM01G39380
Oryza glumaepatula
OGLUM01G39380
N
0.808
ORGLA01G0292000
Oryza glaberrima
ORGLA01G0292000
N
0.808
Bostr.25463s0359
Boechera stricta
Bostr.25463s0359
I
0.808
MLOC_3853
Hordeum vulgare
MLOC_3853
N
0.808
TRIUR3_24639
Triticum urartu
TRIUR3_24639
N
0.808
MLOC_68369
Hordeum vulgare
MLOC_68369
N
0.808
Traes_5DL_09F1F8F79
Triticum aestivum
Traes_5DL_09F1F8F79
N
0.808
OPUNC01G34290
Oryza punctata
OPUNC01G34290
N
0.808
ORUFI01G38680
Oryza rufipogon
ORUFI01G38680
N
0.808
MTR_5g067680
Medicago truncatula
MTR_5g067680
I
0.808
Gorai.004G134600
Gossypium raimondii
Gorai.004G134600
I
0.808
Traes_5BL_175E7FC38
Triticum aestivum
Traes_5BL_175E7FC38
N
0.808
F775_23346
Aegilops tauschii
F775_23346
N
0.808