Carubv10021860m.g (Capsella rubella)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 Carubv10021860m.g T355978_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WRKY63
M02546_2.00 		Arabidopsis thaliana
NGGTCAAN
NTTGACCN		 PBM
Weirauch et al.(2014)
pTH8182 		0.862 0.831
WRKY38
M00901_2.00 		Arabidopsis thaliana
NNRGTCAACBN
NVGTTGACYNN		 PBM
Franco-Zorrilla et al.(2014)
WRKY38 		0.847 0.695
WRKY62
M02561_2.00 		Arabidopsis thaliana
TRGTCAAM
KTTGACYA		 PBM
Weirauch et al.(2014)
pTH8246 		0.843 0.644
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10021860m WRKY 90 150

Links

Other WRKY family TFs
Other Capsella rubella TFs

122 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
WRKY67 Arabidopsis thaliana AT1G66550 I 0.872
Bostr.26959s0262 Boechera stricta Bostr.26959s0262 I 0.869
WRKY67 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000969 I 0.868
WRKY64 Arabidopsis thaliana AT1G66560 I 0.866
Cagra.20277s0001 Capsella grandiflora Cagra.20277s0001 I 0.866
Carubv10021899m.g Capsella rubella Carubv10021899m.g I 0.864
WRKY63 Arabidopsis thaliana AT1G66600 D 0.862
Carubv10022120m.g Capsella rubella Carubv10022120m.g I 0.861
Bo2g095820 Brassica oleracea Bo2g095820 I 0.860
Bra008459 Brassica rapa Bra008459 I 0.860
Bostr.26959s0261 Boechera stricta Bostr.26959s0261 I 0.859
Al_scaffold_0002_1233 Arabidopsis lyrata Al_scaffold_0002_1233 I 0.859
Thhalv10000686m.g Eutrema salsugineum Thhalv10000686m.g I 0.859
Cagra.15225s0001 Capsella grandiflora Cagra.15225s0001 I 0.857
Carubv10021420m.g Capsella rubella Carubv10021420m.g I 0.857
Thhalv10029232m.g Eutrema salsugineum Thhalv10029232m.g I 0.856
WRKY66 Arabidopsis thaliana AT1G80590 I 0.853
Bra008454 Brassica rapa Bra008454 I 0.851
Bostr.6251s0160 Boechera stricta Bostr.6251s0160 I 0.848
Bra028918 Brassica rapa Bra028918 I 0.848
Thhalv10014700m.g Eutrema salsugineum Thhalv10014700m.g I 0.847
WRKY38 Arabidopsis lyrata scaffold_602308.1 I 0.847
WRKY38 Arabidopsis thaliana AT5G22570 D 0.847
Cagra.0255s0014 Capsella grandiflora Cagra.0255s0014 I 0.846
Carubv10012720m.g Capsella rubella Carubv10012720m.g I 0.846
Bostr.20129s0455 Boechera stricta Bostr.20129s0455 I 0.845
WRKY62 Arabidopsis thaliana AT5G01900 D 0.843
WRKY62 Arabidopsis lyrata Al_scaffold_0006_13 I 0.843
Bostr.25463s0359 Boechera stricta Bostr.25463s0359 I 0.841
Bo5g068250 Brassica oleracea Bo5g068250 I 0.841
Bra023211 Brassica rapa Bra023211 I 0.841
Thhalv10015295m.g Eutrema salsugineum Thhalv10015295m.g I 0.840
Bostr.5022s0087 Boechera stricta Bostr.5022s0087 I 0.838
Carubv10022162m.g Capsella rubella Carubv10022162m.g I 0.837
Bra020196 Brassica rapa Bra020196 I 0.832
Bostr.26527s0018 Boechera stricta Bostr.26527s0018 I 0.832
Bostr.26959s0259 Boechera stricta Bostr.26959s0259 I 0.831
Bo2g024040 Brassica oleracea Bo2g024040 I 0.830
Cagra.8153s0001 Capsella grandiflora Cagra.8153s0001 I 0.830
Carubv10002472m.g Capsella rubella Carubv10002472m.g I 0.830
Bra020197 Brassica rapa Bra020197 I 0.830
Bra008456 Brassica rapa Bra008456 I 0.828
Bra002421 Brassica rapa Bra002421 I 0.827
Bo01002s040 Brassica oleracea Bo01002s040 I 0.827
GSMUA_Achr7G22020_001 Musa acuminata GSMUA_Achr7G22020_001 I 0.823
Pavir.Ca00459 Panicum virgatum Pavir.Ca00459 I 0.822
Pavir.Gb01556 Panicum virgatum Pavir.Gb01556 I 0.820
OLONG_002978 Oryza longistaminata OLONG_002978 I 0.818
LPERR05G16170 Leersia perrieri LPERR05G16170 I 0.816
OMERI05G18250 Oryza meridionalis OMERI05G18250 I 0.815
BGIOSGA030113 Oryza indica BGIOSGA030113 I 0.815
BGIOSGA017860 Oryza indica BGIOSGA017860 I 0.815
OLONG_027124 Oryza longistaminata OLONG_027124 I 0.815
ONIVA09G03360 Oryza nivara ONIVA09G03360 I 0.815
ONIVA05G21460 Oryza nivara ONIVA05G21460 I 0.815
OS05G0478800 Oryza sativa OS05G0478800 I 0.815
OGLUM05G21470 Oryza glumaepatula OGLUM05G21470 I 0.815
ORUFI05G21600 Oryza rufipogon ORUFI05G21600 I 0.815
OPUNC05G17980 Oryza punctata OPUNC05G17980 I 0.815
OB05G17240 Oryza brachyantha OB05G17240 I 0.814
Traes_3DS_9A02CF31D Triticum aestivum Traes_3DS_9A02CF31D I 0.814
Si012735m.g Setaria italica Si012735m.g I 0.813
OB05G27830 Oryza brachyantha OB05G27830 I 0.813
ORGLA05G0177200 Oryza glaberrima ORGLA05G0177200 I 0.812
MLOC_66612 Hordeum vulgare MLOC_66612 I 0.812
OS05G0478400 Oryza sativa OS05G0478400 I 0.812
Bra011282 Brassica rapa Bra011282 I 0.812
Bo1g011200 Brassica oleracea Bo1g011200 I 0.812
BGIOSGA030346 Oryza indica BGIOSGA030346 I 0.812
evm.TU.supercontig_86.65 Carica papaya evm.TU.supercontig_86.65 I 0.812
ORUFI05G21560 Oryza rufipogon ORUFI05G21560 I 0.812
OMERI05G18170 Oryza meridionalis OMERI05G18170 I 0.812
OGLUM05G21420 Oryza glumaepatula OGLUM05G21420 I 0.812
OB11G27340 Oryza brachyantha OB11G27340 I 0.812
ONIVA05G21440 Oryza nivara ONIVA05G21440 I 0.812
evm.TU.supercontig_86.64 Carica papaya evm.TU.supercontig_86.64 I 0.811
GRMZM2G382350 Zea mays GRMZM2G382350 I 0.811
MDP0000145953 Malus domestica MDP0000145953 I 0.811
OMERI05G18260 Oryza meridionalis OMERI05G18260 I 0.810
OB05G27850 Oryza brachyantha OB05G27850 I 0.810
OPUNC05G18000 Oryza punctata OPUNC05G18000 I 0.810
OBART05G20340 Oryza barthii OBART05G20340 I 0.810
GRMZM2G029292 Zea mays GRMZM2G029292 I 0.810
MTR_8g067635 Medicago truncatula MTR_8g067635 I 0.810
ORGLA09G0026100 Oryza glaberrima ORGLA09G0026100 I 0.810
F775_43334 Aegilops tauschii F775_43334 I 0.809
Bra023998 Brassica rapa Bra023998 I 0.809
OGLUM03G37240 Oryza glumaepatula OGLUM03G37240 I 0.809
ORUFI03G39090 Oryza rufipogon ORUFI03G39090 I 0.809
Bo7g115250 Brassica oleracea Bo7g115250 I 0.809
Pavir.J39511 Panicum virgatum Pavir.J39511 I 0.809
OBART03G37480 Oryza barthii OBART03G37480 I 0.809
MTR_2g075750 Medicago truncatula MTR_2g075750 I 0.809
MTR_2g075610 Medicago truncatula MTR_2g075610 I 0.809
OLONG_016545 Oryza longistaminata OLONG_016545 I 0.809
OB03G44400 Oryza brachyantha OB03G44400 I 0.809
LPERR03G31720 Leersia perrieri LPERR03G31720 I 0.809
LPERR05G06630 Leersia perrieri LPERR05G06630 I 0.809
ONIVA01G40340 Oryza nivara ONIVA01G40340 I 0.809
PDK_20s1519811g001 Phoenix dactylifera PDK_20s1519811g001 I 0.809
BGIOSGA004703 Oryza indica BGIOSGA004703 I 0.809
BGIOSGA013733 Oryza indica BGIOSGA013733 I 0.809
ORGLA06G0292200 Oryza glaberrima ORGLA06G0292200 I 0.809
Sb03g038170 Sorghum bicolor Sb03g038170 I 0.809
OS01G0820700 Oryza sativa OS01G0820700 I 0.809
ORUFI01G38660 Oryza rufipogon ORUFI01G38660 I 0.809
ORGLA03G0341300 Oryza glaberrima ORGLA03G0341300 I 0.809
Traes_5BL_8688F70C9 Triticum aestivum Traes_5BL_8688F70C9 I 0.809
ONIVA03G38840 Oryza nivara ONIVA03G38840 I 0.809
Pavir.Ha01933 Panicum virgatum Pavir.Ha01933 I 0.809
OPUNC03G34160 Oryza punctata OPUNC03G34160 I 0.809
OPUNC03G34580 Oryza punctata OPUNC03G34580 I 0.809
VIT_08s0058g01390 Vitis vinifera VIT_08s0058g01390 I 0.809
ORGLA01G0291800 Oryza glaberrima ORGLA01G0291800 I 0.809
OMERI03G34710 Oryza meridionalis OMERI03G34710 I 0.809
OGLUM05G21440 Oryza glumaepatula OGLUM05G21440 I 0.808
TCM_019689 Theobroma cacao TCM_019689 I 0.808
ORGLA05G0177400 Oryza glaberrima ORGLA05G0177400 I 0.808
Traes_3AL_2297D6E18 Triticum aestivum Traes_3AL_2297D6E18 I 0.808
OGLUM05G21510 Oryza glumaepatula OGLUM05G21510 I 0.808
OBART05G20330 Oryza barthii OBART05G20330 I 0.808
Pavir.Cb02194 Panicum virgatum Pavir.Cb02194 I 0.808