CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10022120m.g
(
Capsella rubella
)
WRKY
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03106 (WRKY)
IPR003657
Carubv10022120m.g
T355980_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WRKY63
M02546_2.00
Arabidopsis thaliana
NGGTCAAN
NTTGACCN
PBM
Weirauch et al.(2014)
pTH8182
0.863
0.741
WRKY62
M02561_2.00
Arabidopsis thaliana
TRGTCAAM
KTTGACYA
PBM
Weirauch et al.(2014)
pTH8246
0.847
0.593
WRKY38
M00901_2.00
Arabidopsis thaliana
NNRGTCAACBN
NVGTTGACYNN
PBM
Franco-Zorrilla et al.(2014)
WRKY38
0.839
0.685
For this family, TFs with SR scores >
0.808
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10022120m
WRKY
81
136
TKKYGQKKIKTSPYQRCYYRCSYAKDLNCKGTKRVQKIKDNPPVYRTIYMGKHVCK
Links
Other
WRKY
family TFs
Other
Capsella rubella
TFs
119 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10021899m.g
Capsella rubella
Carubv10021899m.g
I
0.877
WRKY64
Arabidopsis thaliana
AT1G66560
I
0.872
WRKY67
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_2000969
I
0.866
Bra008459
Brassica rapa
Bra008459
I
0.865
Bo2g095820
Brassica oleracea
Bo2g095820
I
0.865
Bostr.20129s0455
Boechera stricta
Bostr.20129s0455
I
0.864
Thhalv10000686m.g
Eutrema salsugineum
Thhalv10000686m.g
I
0.864
WRKY63
Arabidopsis thaliana
AT1G66600
D
0.863
Carubv10021860m.g
Capsella rubella
Carubv10021860m.g
I
0.861
Bostr.26959s0262
Boechera stricta
Bostr.26959s0262
I
0.860
Thhalv10029232m.g
Eutrema salsugineum
Thhalv10029232m.g
I
0.860
WRKY67
Arabidopsis thaliana
AT1G66550
I
0.859
Bostr.26959s0261
Boechera stricta
Bostr.26959s0261
I
0.855
Al_scaffold_0002_1233
Arabidopsis lyrata
Al_scaffold_0002_1233
I
0.854
Bra008454
Brassica rapa
Bra008454
I
0.853
Carubv10021420m.g
Capsella rubella
Carubv10021420m.g
I
0.850
Bostr.25463s0359
Boechera stricta
Bostr.25463s0359
I
0.850
Cagra.15225s0001
Capsella grandiflora
Cagra.15225s0001
I
0.850
WRKY66
Arabidopsis thaliana
AT1G80590
I
0.850
WRKY62
Arabidopsis lyrata
Al_scaffold_0006_13
I
0.847
WRKY62
Arabidopsis thaliana
AT5G01900
D
0.847
WRKY38
Arabidopsis lyrata
scaffold_602308.1
I
0.839
WRKY38
Arabidopsis thaliana
AT5G22570
D
0.839
Bostr.6251s0160
Boechera stricta
Bostr.6251s0160
I
0.839
Thhalv10014700m.g
Eutrema salsugineum
Thhalv10014700m.g
I
0.838
Bra028918
Brassica rapa
Bra028918
I
0.838
Cagra.0255s0014
Capsella grandiflora
Cagra.0255s0014
I
0.837
Carubv10012720m.g
Capsella rubella
Carubv10012720m.g
I
0.837
Carubv10022162m.g
Capsella rubella
Carubv10022162m.g
I
0.835
Bostr.5022s0087
Boechera stricta
Bostr.5022s0087
I
0.833
Bra008456
Brassica rapa
Bra008456
I
0.833
Bra023211
Brassica rapa
Bra023211
I
0.832
Bo5g068250
Brassica oleracea
Bo5g068250
I
0.832
Bo01002s040
Brassica oleracea
Bo01002s040
I
0.829
Bra002421
Brassica rapa
Bra002421
I
0.829
Thhalv10015295m.g
Eutrema salsugineum
Thhalv10015295m.g
I
0.828
Cagra.20277s0001
Capsella grandiflora
Cagra.20277s0001
I
0.827
PDK_20s1519811g001
Phoenix dactylifera
PDK_20s1519811g001
I
0.826
MTR_2g075610
Medicago truncatula
MTR_2g075610
I
0.825
MTR_2g075750
Medicago truncatula
MTR_2g075750
I
0.825
Bostr.26527s0018
Boechera stricta
Bostr.26527s0018
I
0.823
Bostr.26959s0259
Boechera stricta
Bostr.26959s0259
I
0.822
Cagra.8153s0001
Capsella grandiflora
Cagra.8153s0001
I
0.821
Carubv10002472m.g
Capsella rubella
Carubv10002472m.g
I
0.821
LPERR10G04210
Leersia perrieri
LPERR10G04210
I
0.820
GRMZM2G158328
Zea mays
GRMZM2G158328
I
0.820
Bra020196
Brassica rapa
Bra020196
I
0.819
GSMUA_Achr7G22020_001
Musa acuminata
GSMUA_Achr7G22020_001
I
0.819
Si012735m.g
Setaria italica
Si012735m.g
I
0.819
Bo2g024040
Brassica oleracea
Bo2g024040
I
0.817
OBART10G05920
Oryza barthii
OBART10G05920
N
0.817
OPUNC10G05310
Oryza punctata
OPUNC10G05310
N
0.817
ORGLA10G0049300
Oryza glaberrima
ORGLA10G0049300
N
0.817
Bra020197
Brassica rapa
Bra020197
I
0.817
OLONG_022888
Oryza longistaminata
OLONG_022888
N
0.817
PGSC0003DMG400020608
Solanum tuberosum
PGSC0003DMG400020608
I
0.817
OMERI10G04260
Oryza meridionalis
OMERI10G04260
N
0.817
MTR_0002s1250
Medicago truncatula
MTR_0002s1250
I
0.816
Ca_18932
Cicer arietinum
Ca_18932
I
0.815
OB05G27850
Oryza brachyantha
OB05G27850
I
0.815
GRMZM2G382350
Zea mays
GRMZM2G382350
I
0.815
MTR_2g075700
Medicago truncatula
MTR_2g075700
I
0.815
Solyc03g095770.2
Solanum lycopersicum
Solyc03g095770.2
I
0.815
OPUNC05G18000
Oryza punctata
OPUNC05G18000
I
0.815
Sb03g038170
Sorghum bicolor
Sb03g038170
I
0.814
Pavir.Ca00459
Panicum virgatum
Pavir.Ca00459
I
0.814
GRMZM2G029292
Zea mays
GRMZM2G029292
I
0.814
Pavir.Gb01556
Panicum virgatum
Pavir.Gb01556
I
0.813
Ca_12915
Cicer arietinum
Ca_12915
I
0.813
ORGLA05G0177400
Oryza glaberrima
ORGLA05G0177400
I
0.813
PGSC0003DMG400008391
Solanum tuberosum
PGSC0003DMG400008391
I
0.813
OGLUM05G21510
Oryza glumaepatula
OGLUM05G21510
I
0.813
GRMZM2G065290
Zea mays
GRMZM2G065290
I
0.813
Sb03g038180
Sorghum bicolor
Sb03g038180
I
0.813
OBART05G20330
Oryza barthii
OBART05G20330
I
0.813
ORGLA01G0291800
Oryza glaberrima
ORGLA01G0291800
I
0.812
ORUFI01G38660
Oryza rufipogon
ORUFI01G38660
I
0.812
Pavir.Ea03257
Panicum virgatum
Pavir.Ea03257
I
0.812
Si002121m.g
Setaria italica
Si002121m.g
I
0.812
Si004791m.g
Setaria italica
Si004791m.g
I
0.812
ONIVA01G40340
Oryza nivara
ONIVA01G40340
I
0.812
OBART01G35310
Oryza barthii
OBART01G35310
I
0.812
OS01G0820700
Oryza sativa
OS01G0820700
I
0.812
BGIOSGA004703
Oryza indica
BGIOSGA004703
I
0.812
MTR_7g073380
Medicago truncatula
MTR_7g073380
I
0.811
MTR_7g073430
Medicago truncatula
MTR_7g073430
I
0.811
PDK_20s1314561g002
Phoenix dactylifera
PDK_20s1314561g002
I
0.811
OB01G44140
Oryza brachyantha
OB01G44140
I
0.811
BRADI2G53495
Brachypodium distachyon
BRADI2G53495
I
0.811
Pavir.Eb03562
Panicum virgatum
Pavir.Eb03562
I
0.811
GLYMA03G00460
Glycine max
GLYMA03G00460
I
0.811
Pavir.J31756
Panicum virgatum
Pavir.J31756
I
0.811
F775_23182
Aegilops tauschii
F775_23182
I
0.811
Pavir.Eb03559
Panicum virgatum
Pavir.Eb03559
I
0.811
OB05G17240
Oryza brachyantha
OB05G17240
I
0.811
Traes_3AL_2297D6E18
Triticum aestivum
Traes_3AL_2297D6E18
I
0.811
Traes_3DL_48F7A19D2
Triticum aestivum
Traes_3DL_48F7A19D2
I
0.811
Lus10014177.g
Linum usitatissimum
Lus10014177.g
I
0.810
GLYMA04G40121
Glycine max
GLYMA04G40121
I
0.810
OMERI01G32480
Oryza meridionalis
OMERI01G32480
I
0.810
Bo6g066790
Brassica oleracea
Bo6g066790
I
0.810
PRUPE_ppa020736mg
Prunus persica
PRUPE_ppa020736mg
I
0.809
PGSC0003DMG400027582
Solanum tuberosum
PGSC0003DMG400027582
I
0.809
Sb03g038200
Sorghum bicolor
Sb03g038200
N
0.809
TRAES3BF081400030CFD_g
Triticum aestivum
TRAES3BF081400030CFD_g
I
0.809
Pm003014
Prunus mume
Pm003014
I
0.809
OPUNC05G18030
Oryza punctata
OPUNC05G18030
I
0.809
OGLUM05G21440
Oryza glumaepatula
OGLUM05G21440
I
0.809
Si028202m.g
Setaria italica
Si028202m.g
I
0.809
GSMUA_Achr8G25110_001
Musa acuminata
GSMUA_Achr8G25110_001
I
0.808
BGIOSGA030113
Oryza indica
BGIOSGA030113
I
0.808
ONIVA09G03360
Oryza nivara
ONIVA09G03360
I
0.808
OLONG_002978
Oryza longistaminata
OLONG_002978
I
0.808
Pavir.J38024
Panicum virgatum
Pavir.J38024
N
0.808
Si005138m.g
Setaria italica
Si005138m.g
N
0.808
Eucgr.K01289
Eucalyptus grandis
Eucgr.K01289
I
0.808
Pavir.J16737
Panicum virgatum
Pavir.J16737
N
0.808
Ca_09495
Cicer arietinum
Ca_09495
I
0.808
Pavir.J37617
Panicum virgatum
Pavir.J37617
N
0.808