Carubv10022120m.g (Capsella rubella)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 Carubv10022120m.g T355980_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WRKY63
M02546_2.00 		Arabidopsis thaliana
NGGTCAAN
NTTGACCN		 PBM
Weirauch et al.(2014)
pTH8182 		0.863 0.741
WRKY62
M02561_2.00 		Arabidopsis thaliana
TRGTCAAM
KTTGACYA		 PBM
Weirauch et al.(2014)
pTH8246 		0.847 0.593
WRKY38
M00901_2.00 		Arabidopsis thaliana
NNRGTCAACBN
NVGTTGACYNN		 PBM
Franco-Zorrilla et al.(2014)
WRKY38 		0.839 0.685
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10022120m WRKY 81 136

Links

Other WRKY family TFs
Other Capsella rubella TFs

119 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10021899m.g Capsella rubella Carubv10021899m.g I 0.877
WRKY64 Arabidopsis thaliana AT1G66560 I 0.872
WRKY67 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000969 I 0.866
Bra008459 Brassica rapa Bra008459 I 0.865
Bo2g095820 Brassica oleracea Bo2g095820 I 0.865
Bostr.20129s0455 Boechera stricta Bostr.20129s0455 I 0.864
Thhalv10000686m.g Eutrema salsugineum Thhalv10000686m.g I 0.864
WRKY63 Arabidopsis thaliana AT1G66600 D 0.863
Carubv10021860m.g Capsella rubella Carubv10021860m.g I 0.861
Bostr.26959s0262 Boechera stricta Bostr.26959s0262 I 0.860
Thhalv10029232m.g Eutrema salsugineum Thhalv10029232m.g I 0.860
WRKY67 Arabidopsis thaliana AT1G66550 I 0.859
Bostr.26959s0261 Boechera stricta Bostr.26959s0261 I 0.855
Al_scaffold_0002_1233 Arabidopsis lyrata Al_scaffold_0002_1233 I 0.854
Bra008454 Brassica rapa Bra008454 I 0.853
Carubv10021420m.g Capsella rubella Carubv10021420m.g I 0.850
Bostr.25463s0359 Boechera stricta Bostr.25463s0359 I 0.850
Cagra.15225s0001 Capsella grandiflora Cagra.15225s0001 I 0.850
WRKY66 Arabidopsis thaliana AT1G80590 I 0.850
WRKY62 Arabidopsis lyrata Al_scaffold_0006_13 I 0.847
WRKY62 Arabidopsis thaliana AT5G01900 D 0.847
WRKY38 Arabidopsis lyrata scaffold_602308.1 I 0.839
WRKY38 Arabidopsis thaliana AT5G22570 D 0.839
Bostr.6251s0160 Boechera stricta Bostr.6251s0160 I 0.839
Thhalv10014700m.g Eutrema salsugineum Thhalv10014700m.g I 0.838
Bra028918 Brassica rapa Bra028918 I 0.838
Cagra.0255s0014 Capsella grandiflora Cagra.0255s0014 I 0.837
Carubv10012720m.g Capsella rubella Carubv10012720m.g I 0.837
Carubv10022162m.g Capsella rubella Carubv10022162m.g I 0.835
Bostr.5022s0087 Boechera stricta Bostr.5022s0087 I 0.833
Bra008456 Brassica rapa Bra008456 I 0.833
Bra023211 Brassica rapa Bra023211 I 0.832
Bo5g068250 Brassica oleracea Bo5g068250 I 0.832
Bo01002s040 Brassica oleracea Bo01002s040 I 0.829
Bra002421 Brassica rapa Bra002421 I 0.829
Thhalv10015295m.g Eutrema salsugineum Thhalv10015295m.g I 0.828
Cagra.20277s0001 Capsella grandiflora Cagra.20277s0001 I 0.827
PDK_20s1519811g001 Phoenix dactylifera PDK_20s1519811g001 I 0.826
MTR_2g075610 Medicago truncatula MTR_2g075610 I 0.825
MTR_2g075750 Medicago truncatula MTR_2g075750 I 0.825
Bostr.26527s0018 Boechera stricta Bostr.26527s0018 I 0.823
Bostr.26959s0259 Boechera stricta Bostr.26959s0259 I 0.822
Cagra.8153s0001 Capsella grandiflora Cagra.8153s0001 I 0.821
Carubv10002472m.g Capsella rubella Carubv10002472m.g I 0.821
LPERR10G04210 Leersia perrieri LPERR10G04210 I 0.820
GRMZM2G158328 Zea mays GRMZM2G158328 I 0.820
Bra020196 Brassica rapa Bra020196 I 0.819
GSMUA_Achr7G22020_001 Musa acuminata GSMUA_Achr7G22020_001 I 0.819
Si012735m.g Setaria italica Si012735m.g I 0.819
Bo2g024040 Brassica oleracea Bo2g024040 I 0.817
OBART10G05920 Oryza barthii OBART10G05920 N 0.817
OPUNC10G05310 Oryza punctata OPUNC10G05310 N 0.817
ORGLA10G0049300 Oryza glaberrima ORGLA10G0049300 N 0.817
Bra020197 Brassica rapa Bra020197 I 0.817
OLONG_022888 Oryza longistaminata OLONG_022888 N 0.817
PGSC0003DMG400020608 Solanum tuberosum PGSC0003DMG400020608 I 0.817
OMERI10G04260 Oryza meridionalis OMERI10G04260 N 0.817
MTR_0002s1250 Medicago truncatula MTR_0002s1250 I 0.816
Ca_18932 Cicer arietinum Ca_18932 I 0.815
OB05G27850 Oryza brachyantha OB05G27850 I 0.815
GRMZM2G382350 Zea mays GRMZM2G382350 I 0.815
MTR_2g075700 Medicago truncatula MTR_2g075700 I 0.815
Solyc03g095770.2 Solanum lycopersicum Solyc03g095770.2 I 0.815
OPUNC05G18000 Oryza punctata OPUNC05G18000 I 0.815
Sb03g038170 Sorghum bicolor Sb03g038170 I 0.814
Pavir.Ca00459 Panicum virgatum Pavir.Ca00459 I 0.814
GRMZM2G029292 Zea mays GRMZM2G029292 I 0.814
Pavir.Gb01556 Panicum virgatum Pavir.Gb01556 I 0.813
Ca_12915 Cicer arietinum Ca_12915 I 0.813
ORGLA05G0177400 Oryza glaberrima ORGLA05G0177400 I 0.813
PGSC0003DMG400008391 Solanum tuberosum PGSC0003DMG400008391 I 0.813
OGLUM05G21510 Oryza glumaepatula OGLUM05G21510 I 0.813
GRMZM2G065290 Zea mays GRMZM2G065290 I 0.813
Sb03g038180 Sorghum bicolor Sb03g038180 I 0.813
OBART05G20330 Oryza barthii OBART05G20330 I 0.813
ORGLA01G0291800 Oryza glaberrima ORGLA01G0291800 I 0.812
ORUFI01G38660 Oryza rufipogon ORUFI01G38660 I 0.812
Pavir.Ea03257 Panicum virgatum Pavir.Ea03257 I 0.812
Si002121m.g Setaria italica Si002121m.g I 0.812
Si004791m.g Setaria italica Si004791m.g I 0.812
ONIVA01G40340 Oryza nivara ONIVA01G40340 I 0.812
OBART01G35310 Oryza barthii OBART01G35310 I 0.812
OS01G0820700 Oryza sativa OS01G0820700 I 0.812
BGIOSGA004703 Oryza indica BGIOSGA004703 I 0.812
MTR_7g073380 Medicago truncatula MTR_7g073380 I 0.811
MTR_7g073430 Medicago truncatula MTR_7g073430 I 0.811
PDK_20s1314561g002 Phoenix dactylifera PDK_20s1314561g002 I 0.811
OB01G44140 Oryza brachyantha OB01G44140 I 0.811
BRADI2G53495 Brachypodium distachyon BRADI2G53495 I 0.811
Pavir.Eb03562 Panicum virgatum Pavir.Eb03562 I 0.811
GLYMA03G00460 Glycine max GLYMA03G00460 I 0.811
Pavir.J31756 Panicum virgatum Pavir.J31756 I 0.811
F775_23182 Aegilops tauschii F775_23182 I 0.811
Pavir.Eb03559 Panicum virgatum Pavir.Eb03559 I 0.811
OB05G17240 Oryza brachyantha OB05G17240 I 0.811
Traes_3AL_2297D6E18 Triticum aestivum Traes_3AL_2297D6E18 I 0.811
Traes_3DL_48F7A19D2 Triticum aestivum Traes_3DL_48F7A19D2 I 0.811
Lus10014177.g Linum usitatissimum Lus10014177.g I 0.810
GLYMA04G40121 Glycine max GLYMA04G40121 I 0.810
OMERI01G32480 Oryza meridionalis OMERI01G32480 I 0.810
Bo6g066790 Brassica oleracea Bo6g066790 I 0.810
PRUPE_ppa020736mg Prunus persica PRUPE_ppa020736mg I 0.809
PGSC0003DMG400027582 Solanum tuberosum PGSC0003DMG400027582 I 0.809
Sb03g038200 Sorghum bicolor Sb03g038200 N 0.809
TRAES3BF081400030CFD_g Triticum aestivum TRAES3BF081400030CFD_g I 0.809
Pm003014 Prunus mume Pm003014 I 0.809
OPUNC05G18030 Oryza punctata OPUNC05G18030 I 0.809
OGLUM05G21440 Oryza glumaepatula OGLUM05G21440 I 0.809
Si028202m.g Setaria italica Si028202m.g I 0.809
GSMUA_Achr8G25110_001 Musa acuminata GSMUA_Achr8G25110_001 I 0.808
BGIOSGA030113 Oryza indica BGIOSGA030113 I 0.808
ONIVA09G03360 Oryza nivara ONIVA09G03360 I 0.808
OLONG_002978 Oryza longistaminata OLONG_002978 I 0.808
Pavir.J38024 Panicum virgatum Pavir.J38024 N 0.808
Si005138m.g Setaria italica Si005138m.g N 0.808
Eucgr.K01289 Eucalyptus grandis Eucgr.K01289 I 0.808
Pavir.J16737 Panicum virgatum Pavir.J16737 N 0.808
Ca_09495 Cicer arietinum Ca_09495 I 0.808
Pavir.J37617 Panicum virgatum Pavir.J37617 N 0.808