Pavir.Fa00741 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Fa00741 T009438_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF017
M06568_2.00 		Arabidopsis thaliana
NHNYCRCCGWCMWH
DWKGWCGGYGRNDN		 Dap-seq
OMalley et al.(2016)
At1g19210_col_a 		0.691 0.800
ERF017
M06569_2.00 		Arabidopsis thaliana
NNNHNNCRCCGWCMW
WKGWCGGYGNNDNNN		 Dap-seq
OMalley et al.(2016)
At1g19210_colamp_a 		0.691 0.800
ERF018
M00842_2.00 		Arabidopsis thaliana
HRCCGDCMN
NKGHCGGYD		 PBM
Franco-Zorrilla et al.(2014)
ORA47 		0.689 0.780
ERF018
M01610_2.00 		Arabidopsis thaliana
NRCCGNCHN
NDGNCGGYN		 PBM
Weirauch et al.(2014)
pTH7215 		0.689 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fa00741.1.p AP2 22 73

Links

Other AP2 family TFs
Other Panicum virgatum TFs

117 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29739.m003647 Ricinus communis 29739.m003647 I 0.683
29739.m003716 Ricinus communis 29739.m003716 I 0.699
Aquca_076_00039 Aquilegia coerulea Aquca_076_00039 I 0.699
ERF017 Arabidopsis thaliana AT1G19210 D 0.691
ERF018 Arabidopsis thaliana AT1G74930 D 0.689
BGIOSGA005486 Oryza indica BGIOSGA005486 I 0.685
BGIOSGA022471 Oryza indica BGIOSGA022471 I 0.696
BGIOSGA028781 Oryza indica BGIOSGA028781 I 0.809
Bo6g086740 Brassica oleracea Bo6g086740 I 0.682
Bo6g119120 Brassica oleracea Bo6g119120 I 0.686
Bo8g068370 Brassica oleracea Bo8g068370 I 0.705
Bo8g102870 Brassica oleracea Bo8g102870 I 0.694
Bostr.3288s0141 Boechera stricta Bostr.3288s0141 I 0.689
Bostr.7128s0526 Boechera stricta Bostr.7128s0526 I 0.678
Bra003780 Brassica rapa Bra003780 I 0.682
Bra015882 Brassica rapa Bra015882 I 0.680
Bra016518 Brassica rapa Bra016518 I 0.705
Bra031069 Brassica rapa Bra031069 I 0.694
BRADI3G37544 Brachypodium distachyon BRADI3G37544 I 0.800
Cagra.0402s0035 Capsella grandiflora Cagra.0402s0035 I 0.682
Cagra.1961s0079 Capsella grandiflora Cagra.1961s0079 I 0.691
Carubv10011394m.g Capsella rubella Carubv10011394m.g I 0.691
Carubv10020965m.g Capsella rubella Carubv10020965m.g I 0.682
cassava10604.m1 Manihot esculenta cassava10604.m1 I 0.686
cassava20547.m1 Manihot esculenta cassava20547.m1 I 0.677
cassava25057.valid.m1 Manihot esculenta cassava25057.valid.m1 I 0.699
Ca_01683 Cicer arietinum Ca_01683 I 0.688
Ca_09124 Cicer arietinum Ca_09124 I 0.677
chr5.CM0040.40.nd Lotus japonicus chr5.CM0040.40.nd I 0.677
Ciclev10009540m.g Citrus clementina Ciclev10009540m.g I 0.684
Ciclev10010348m.g Citrus clementina Ciclev10010348m.g I 0.698
Cla007584 Citrullus lanatus Cla007584 I 0.678
Cla011318 Citrullus lanatus Cla011318 I 0.709
Cucsa.141980 Cucumis sativus Cucsa.141980 I 0.709
Cucsa.271180 Cucumis sativus Cucsa.271180 I 0.679
Eucgr.C00780 Eucalyptus grandis Eucgr.C00780 I 0.699
Eucgr.C03175 Eucalyptus grandis Eucgr.C03175 I 0.752
Eucgr.C03297 Eucalyptus grandis Eucgr.C03297 I 0.686
evm.TU.supercontig_266.5 Carica papaya evm.TU.supercontig_266.5 I 0.688
F775_23111 Aegilops tauschii F775_23111 I 0.797
fgenesh2_kg.1__2098__AT1G19210.1 Arabidopsis lyrata fgenesh2_kg.1__2098__AT1G19210.1 I 0.691
ORA47 Arabidopsis lyrata fgenesh2_kg.2__1761__AT1G74930.1 I 0.689
gene12919-v1.0-hybrid Fragaria vesca gene12919-v1.0-hybrid I 0.688
GLYMA04G06095 Glycine max GLYMA04G06095 I 0.688
GLYMA06G06101 Glycine max GLYMA06G06101 I 0.688
GLYMA09G08330 Glycine max GLYMA09G08330 I 0.680
GLYMA15G19910 Glycine max GLYMA15G19910 I 0.680
Gorai.001G016800 Gossypium raimondii Gorai.001G016800 I 0.685
Gorai.001G019100 Gossypium raimondii Gorai.001G019100 I 0.702
Gorai.004G285900 Gossypium raimondii Gorai.004G285900 I 0.687
Gorai.010G091100 Gossypium raimondii Gorai.010G091100 I 0.709
GRMZM2G097081 Zea mays GRMZM2G097081 I 0.700
GRMZM2G163745 Zea mays GRMZM2G163745 I 0.809
GSMUA_Achr5G05160_001 Musa acuminata GSMUA_Achr5G05160_001 I 0.742
GSMUA_Achr9G14360_001 Musa acuminata GSMUA_Achr9G14360_001 I 0.750
GSMUA_AchrUn_randomG02200_001 Musa acuminata GSMUA_AchrUn_randomG02200_001 I 0.689
LPERR08G14000 Leersia perrieri LPERR08G14000 I 0.809
Lus10009798.g Linum usitatissimum Lus10009798.g I 0.699
Lus10033420.g Linum usitatissimum Lus10033420.g I 0.693
Lus10034885.g Linum usitatissimum Lus10034885.g I 0.693
Lus10038082.g Linum usitatissimum Lus10038082.g I 0.699
MDP0000649022 Malus domestica MDP0000649022 I 0.688
mgf021940m Mimulus guttatus mgf021940m I 0.682
mgf024162m Mimulus guttatus mgf024162m I 0.686
MTR_1g014800 Medicago truncatula MTR_1g014800 I 0.680
MTR_3g105480 Medicago truncatula MTR_3g105480 I 0.740
MTR_3g105510 Medicago truncatula MTR_3g105510 I 0.740
OB08G24280 Oryza brachyantha OB08G24280 I 0.809
OBART06G06190 Oryza barthii OBART06G06190 I 0.698
OBART06G06230 Oryza barthii OBART06G06230 N 0.681
OBART08G16950 Oryza barthii OBART08G16950 I 0.809
OGLUM02G35980 Oryza glumaepatula OGLUM02G35980 I 0.685
OGLUM06G06520 Oryza glumaepatula OGLUM06G06520 I 0.698
OGLUM06G06550 Oryza glumaepatula OGLUM06G06550 N 0.684
OGLUM08G17690 Oryza glumaepatula OGLUM08G17690 I 0.809
OMERI01G37050 Oryza meridionalis OMERI01G37050 I 0.685
OMERI03G32210 Oryza meridionalis OMERI03G32210 I 0.698
ONIVA02G36910 Oryza nivara ONIVA02G36910 I 0.685
ONIVA06G07190 Oryza nivara ONIVA06G07190 I 0.698
ONIVA08G18470 Oryza nivara ONIVA08G18470 I 0.809
OPUNC02G32160 Oryza punctata OPUNC02G32160 I 0.685
OPUNC08G14840 Oryza punctata OPUNC08G14840 I 0.809
orange1.1g029068m.g Citrus sinensis orange1.1g029068m.g I 0.684
ORGLA02G0301600 Oryza glaberrima ORGLA02G0301600 I 0.685
ORGLA06G0057200 Oryza glaberrima ORGLA06G0057200 I 0.698
ORGLA06G0057400 Oryza glaberrima ORGLA06G0057400 N 0.681
ORUFI02G36340 Oryza rufipogon ORUFI02G36340 I 0.685
ORUFI06G06480 Oryza rufipogon ORUFI06G06480 I 0.696
ORUFI08G18850 Oryza rufipogon ORUFI08G18850 I 0.809
OS02G0781300 Oryza sativa OS02G0781300 I 0.685
OS08G0454000 Oryza sativa OS08G0454000 I 0.809
Pavir.Aa00296 Panicum virgatum Pavir.Aa00296 I 0.705
Pavir.Fb01602 Panicum virgatum Pavir.Fb01602 I 0.809
Pavir.J00593 Panicum virgatum Pavir.J00593 I 0.707
PGSC0003DMG400030781 Solanum tuberosum PGSC0003DMG400030781 I 0.736
Pm027117 Prunus mume Pm027117 I 0.699
POPTR_0006s14090 Populus trichocarpa POPTR_0006s14090 I 0.695
POPTR_0006s14100 Populus trichocarpa POPTR_0006s14100 I 0.699
POPTR_0006s23480 Populus trichocarpa POPTR_0006s23480 I 0.693
POPTR_0018s08320 Populus trichocarpa POPTR_0018s08320 I 0.677
PRUPE_ppa011336mg Prunus persica PRUPE_ppa011336mg I 0.699
SapurV1A.0057s0300 Salix purpurea SapurV1A.0057s0300 I 0.687
SapurV1A.0373s0040 Salix purpurea SapurV1A.0373s0040 I 0.693
SapurV1A.0521s0050 Salix purpurea SapurV1A.0521s0050 I 0.691
SapurV1A.2229s0010 Salix purpurea SapurV1A.2229s0010 I 0.693
Sb07g022265 Sorghum bicolor Sb07g022265 I 0.764
Si008104m.g Setaria italica Si008104m.g I 0.739
Si015027m.g Setaria italica Si015027m.g I 0.809
Si019636m.g Setaria italica Si019636m.g I 0.705
Solyc06g054630.1 Solanum lycopersicum Solyc06g054630.1 I 0.736
TCM_037415 Theobroma cacao TCM_037415 I 0.699
TCM_037486 Theobroma cacao TCM_037486 I 0.698
Thhalv10009812m.g Eutrema salsugineum Thhalv10009812m.g I 0.689
TRAES3BF084200010CFD_g Triticum aestivum TRAES3BF084200010CFD_g I 0.799
Traes_6DL_FA861D610 Triticum aestivum Traes_6DL_FA861D610 I 0.706
ORA47 Vitis vinifera VIT_04s0008g02230 I 0.688
VIT_11s0016g00660 Vitis vinifera VIT_11s0016g00660 I 0.697