tfap4 (Oryzias latipes)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSORLG00000015050 T036447_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tfap4
M01717_2.00 		Mus musculus
VHCABVYGB
VCRBVTGDB		 PBM
Weirauch et al.(2014)
pTH5067 		0.912 0.942
TFAP4
M02776_2.00 		Homo sapiens
AWCAGCTGWY
RWCAGCTGWT		 SELEX
Jolma et al.(2013)
TFAP4_1 		0.912 0.942
TFAP4
M02777_2.00 		Homo sapiens
AWCAGCTGWT
AWCAGCTGWT		 SELEX
Jolma et al.(2013)
TFAP4_2 		0.912 0.942
TFAP4
M04066_2.00 		Homo sapiens
VHCAKVTGDB
VHCABMTGDB		 SELEX
Yin et al.(2017)
TFAP4_eDBD_HT-SELEX_1 		0.912 0.942
TFAP4
M04067_2.00 		Homo sapiens
VWCAGCTGWB
VWCAGCTGWB		 SELEX
Yin et al.(2017)
TFAP4_eDBD_HT-SELEX_2 		0.912 0.942
TFAP4
M04070_2.00 		Homo sapiens
RHCAYVTGDB
VHCABRTGDY		 SELEX
Yin et al.(2017)
TFAP4_FL_HT-SELEX_1 		0.912 0.942
TFAP4
M04071_2.00 		Homo sapiens
VHCAGCTGDB
VHCAGCTGDB		 SELEX
Yin et al.(2017)
TFAP4_FL_HT-SELEX_2 		0.912 0.942
TFAP4
M08712_2.00 		Homo sapiens
VMNCAGCTGR
YCAGCTGNKB		 Misc
Kulakovskiy et al.(2013)
TFAP4_HUMAN.H11MO.0.A 		0.912 0.942
TFAP4
M09453_2.00 		Homo sapiens
NVHCAGCTGD
HCAGCTGDBN		 Misc
Heinz et al.(2010)
AML-Tfap4_GSE45738 		0.912 0.942
TFAP4
M09802_2.00 		Homo sapiens
MNGNCHVCAGCTGDBBBW
WVVVHCAGCTGBDGNCNK		 Transfac
Matys et al.(2006)
V$AP4_01 		0.912 0.942
TFAP4
M09803_2.00 		Homo sapiens
NNSAGCTGHB
VDCAGCTSNN		 Transfac
Matys et al.(2006)
V$AP4_Q5 		0.912 0.942
TFAP4
M09804_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AP4_Q6_01 		0.912 0.942
TFAP4
M09805_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AP4_Q6_02 		0.912 0.942
TFAP4
M09806_2.00 		Homo sapiens
NVCAGCTGHB
VDCAGCTGBN		 Transfac
Matys et al.(2006)
V$AP4_Q6 		0.912 0.942
TFAP4
M04068_2.00 		Homo sapiens
DHCABMTGDN
NHCAKVTGDH		 SELEX
Yin et al.(2017)
TFAP4_eDBD_Methyl-HT-SELEX_1 		0.912 0.942
TFAP4
M04069_2.00 		Homo sapiens
AWCAGCTGWT
AWCAGCTGWT		 SELEX
Yin et al.(2017)
TFAP4_eDBD_Methyl-HT-SELEX_2 		0.912 0.942
TFAP4
M04072_2.00 		Homo sapiens
VHCABVTGDB
VHCABVTGDB		 SELEX
Yin et al.(2017)
TFAP4_FL_Methyl-HT-SELEX_1 		0.912 0.942
TFAP4
M04073_2.00 		Homo sapiens
VHCAGCTGDB
VHCAGCTGDB		 SELEX
Yin et al.(2017)
TFAP4_FL_Methyl-HT-SELEX_2 		0.912 0.942
crp
M03595_2.00 		Drosophila melanogaster
AACAGCTGWT
AWCAGCTGTT		 SELEX
Nitta et al.(2015)
crp_1 		0.845 0.827
crp
M05937_2.00 		Drosophila melanogaster
VAHCAGCTGAY
RTCAGCTGDWB		 B1H
Zhu et al.(2011)
crp_SANGER_10_FBgn0001994 		0.845 0.827
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000018863 bHLH 50 101

Links

Other bHLH family TFs
Other Oryzias latipes TFs

100 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27494.m000045 Ricinus communis 27494.m000045 I
29908.m005953 Ricinus communis 29908.m005953 I
AC207656.3_FG002 Zea mays AC207656.3_FG002 I
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I
ARF17 Arabidopsis thaliana AT1G77850 N
ARF16 Arabidopsis thaliana AT4G30080 D
BGIOSGA008657 Oryza indica BGIOSGA008657 I
ARF10 Oryza indica BGIOSGA016767 I
BGIOSGA033142 Oryza indica BGIOSGA033142 I
Bo1g014600 Brassica oleracea Bo1g014600 I
Bo4g071620 Brassica oleracea Bo4g071620 I
Bo6g081980 Brassica oleracea Bo6g081980 N
Bo6g121520 Brassica oleracea Bo6g121520 N
Bo7g114200 Brassica oleracea Bo7g114200 I
Bostr.20129s0222 Boechera stricta Bostr.20129s0222 N
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I
Bra003665 Brassica rapa Bra003665 N
Bra011162 Brassica rapa Bra011162 I
Bra015651 Brassica rapa Bra015651 N
Bra024109 Brassica rapa Bra024109 I
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I
Cagra.0096s0050 Capsella grandiflora Cagra.0096s0050 N
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I
Carubv10004220m.g Capsella rubella Carubv10004220m.g I
Carubv10019991m.g Capsella rubella Carubv10019991m.g N
cassava36161.valid.m1 Manihot esculenta cassava36161.valid.m1 I
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I
Ca_02541 Cicer arietinum Ca_02541 I
Ca_26121 Cicer arietinum Ca_26121 I
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I
Ciclev10000693m.g Citrus clementina Ciclev10000693m.g I
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I
Cla008883 Citrullus lanatus Cla008883 I
Cla022413 Citrullus lanatus Cla022413 I
Cucsa.381330 Cucumis sativus Cucsa.381330 I
Cucsa.386060 Cucumis sativus Cucsa.386060 I
Eucgr.F04380 Eucalyptus grandis Eucgr.F04380 I
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I
F775_32978 Aegilops tauschii F775_32978 I
gene16050-v1.0-hybrid Fragaria vesca gene16050-v1.0-hybrid N
GLYMA04G43350 Glycine max GLYMA04G43350 N
GLYMA10G35481 Glycine max GLYMA10G35481 I
GLYMA11G20490 Glycine max GLYMA11G20490 I
GLYMA12G08110 Glycine max GLYMA12G08110 I
GLYMA12G29720 Glycine max GLYMA12G29720 I
GLYMA13G02410 Glycine max GLYMA13G02410 N
GLYMA13G40030 Glycine max GLYMA13G40030 I
Gorai.009G241900 Gossypium raimondii Gorai.009G241900 I
Gorai.010G046000 Gossypium raimondii Gorai.010G046000 I
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I
GRMZM2G153233 Zea mays GRMZM2G153233 I
GRMZM2G159399 Zea mays GRMZM2G159399 I
GRMZM2G390641 Zea mays GRMZM2G390641 I
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I
GSMUA_Achr9G29480_001 Musa acuminata GSMUA_Achr9G29480_001 I
LPERR02G20290 Leersia perrieri LPERR02G20290 I
LPERR06G21020 Leersia perrieri LPERR06G21020 I
LPERR10G09970 Leersia perrieri LPERR10G09970 I
Lus10009770.g Linum usitatissimum Lus10009770.g N
Lus10016091.g Linum usitatissimum Lus10016091.g I
Lus10021467.g Linum usitatissimum Lus10021467.g I
Lus10023519.g Linum usitatissimum Lus10023519.g I
Lus10024753.g Linum usitatissimum Lus10024753.g N
Lus10024754.g Linum usitatissimum Lus10024754.g N
Lus10040403.g Linum usitatissimum Lus10040403.g I
MDP0000131481 Malus domestica MDP0000131481 I
MDP0000221322 Malus domestica MDP0000221322 I
MDP0000232116 Malus domestica MDP0000232116 N
MDP0000256621 Malus domestica MDP0000256621 I
mgf024607m Mimulus guttatus mgf024607m I
MLOC_64795 Hordeum vulgare MLOC_64795 I
MLOC_77438 Hordeum vulgare MLOC_77438 I
MTR_1g094960 Medicago truncatula MTR_1g094960 I
MTR_2g094570 Medicago truncatula MTR_2g094570 I
MTR_3g073420 Medicago truncatula MTR_3g073420 N
MTR_4g058930 Medicago truncatula MTR_4g058930 I
OB02G32150 Oryza brachyantha OB02G32150 I
OB06G32920 Oryza brachyantha OB06G32920 I
OB10G20590 Oryza brachyantha OB10G20590 I
OBART04G18910 Oryza barthii OBART04G18910 I
OBART06G25230 Oryza barthii OBART06G25230 I
OBART10G13410 Oryza barthii OBART10G13410 I
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I
OLONG_000617 Oryza longistaminata OLONG_000617 I
OLONG_021130 Oryza longistaminata OLONG_021130 I
OMERI02G24320 Oryza meridionalis OMERI02G24320 I
OMERI04G15770 Oryza meridionalis OMERI04G15770 I
OMERI06G25370 Oryza meridionalis OMERI06G25370 I
OMERI10G10210 Oryza meridionalis OMERI10G10210 I
ONIVA02G27180 Oryza nivara ONIVA02G27180 I
ONIVA06G28270 Oryza nivara ONIVA06G28270 I
ONIVA06G31350 Oryza nivara ONIVA06G31350 I
ONIVA10G14700 Oryza nivara ONIVA10G14700 I
OPUNC02G22610 Oryza punctata OPUNC02G22610 I
OPUNC04G16630 Oryza punctata OPUNC04G16630 I
OPUNC06G22960 Oryza punctata OPUNC06G22960 I
OPUNC10G11840 Oryza punctata OPUNC10G11840 I
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I
orange1.1g008078m.g Citrus sinensis orange1.1g008078m.g I
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I
ARF8 Oryza sativa OS02G0628600 I
OS04G0519700 Oryza sativa OS04G0519700 I
ARF18 Oryza sativa OS06G0685700 I
ARF22 Oryza sativa OS10G0479900 I
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I
Pavir.J24081 Panicum virgatum Pavir.J24081 I
Pavir.J26437 Panicum virgatum Pavir.J26437 I
Pavir.J37640 Panicum virgatum Pavir.J37640 I
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I
PGSC0003DMG400027798 Solanum tuberosum PGSC0003DMG400027798 N
Pm019126 Prunus mume Pm019126 I
POPTR_0002s09050 Populus trichocarpa POPTR_0002s09050 I
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I
POPTR_0005s16320 Populus trichocarpa POPTR_0005s16320 I
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I
SapurV1A.0010s0540 Salix purpurea SapurV1A.0010s0540 I
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I
SapurV1A.0331s0130 Salix purpurea SapurV1A.0331s0130 I
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I
Sb01g019130 Sorghum bicolor Sb01g019130 I
Sb10g027790 Sorghum bicolor Sb10g027790 I
ARF17 Arabidopsis lyrata scaffold_202748.1 N
ARF16 Arabidopsis lyrata scaffold_701217.1 I
SELMODRAFT_443304 Selaginella moellendorffii SELMODRAFT_443304 I
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I
Si005991m.g Setaria italica Si005991m.g I
Si009541m.g Setaria italica Si009541m.g I
Si016509m.g Setaria italica Si016509m.g I
Si034525m.g Setaria italica Si034525m.g I
Solyc11g013480.1 Solanum lycopersicum Solyc11g013480.1 N
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I
TCM_035002 Theobroma cacao TCM_035002 I
TCM_043157 Theobroma cacao TCM_043157 I
Thhalv10018331m.g Eutrema salsugineum Thhalv10018331m.g N
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I