Bra032845 (Brassica rapa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bra032845 T081961_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.802 0.913
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.798 0.913
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.798 0.913
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.798 0.913
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.772 0.826
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.764 0.848
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.764 0.848
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra032845.1-P C2H2 ZF 88 110
Bra032845.1-P C2H2 ZF 141 164

Links

Other C2H2 ZF family TFs
Other Brassica rapa TFs

144 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28152.m000908 Ricinus communis 28152.m000908 I 0.763
29661.m000908 Ricinus communis 29661.m000908 I 0.763
30170.m013751 Ricinus communis 30170.m013751 I 0.774
AC185108.3_FG011 Zea mays AC185108.3_FG011 I 0.769
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.768
ZAT10 Arabidopsis thaliana AT1G27730 D 0.798
AZF2 Arabidopsis thaliana AT3G19580 D 0.772
ZAT6 Arabidopsis thaliana AT5G04340 D 0.802
AZF3 Arabidopsis thaliana AT5G43170 I 0.790
AZF1 Arabidopsis thaliana AT5G67450 D 0.764
BGIOSGA010468 Oryza indica BGIOSGA010468 I 0.757
Bo1g081350 Brassica oleracea Bo1g081350 I 0.769
Bo1g113530 Brassica oleracea Bo1g113530 I 0.778
Bo2g168030 Brassica oleracea Bo2g168030 I 0.764
Bo3g142840 Brassica oleracea Bo3g142840 I 0.798
Bo4g104940 Brassica oleracea Bo4g104940 I 0.776
Bo5g052290 Brassica oleracea Bo5g052290 I 0.827
Bo5g113850 Brassica oleracea Bo5g113850 I 0.778
Bo6g077190 Brassica oleracea Bo6g077190 I 0.776
Bo7g048650 Brassica oleracea Bo7g048650 I 0.803
Bo7g065200 Brassica oleracea Bo7g065200 I 0.796
Bo8g095300 Brassica oleracea Bo8g095300 I 0.776
Bo9g019120 Brassica oleracea Bo9g019120 I 0.764
Bo9g181170 Brassica oleracea Bo9g181170 I 0.802
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.803
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.778
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.802
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.767
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.802
Bra003422 Brassica rapa Bra003422 I 0.776
Bra007545 Brassica rapa Bra007545 I 0.776
Bra009464 Brassica rapa Bra009464 I 0.802
Bra010922 Brassica rapa Bra010922 I 0.798
Bra012914 Brassica rapa Bra012914 I 0.769
Bra014483 Brassica rapa Bra014483 I 0.776
Bra018817 Brassica rapa Bra018817 I 0.762
Bra022436 Brassica rapa Bra022436 I 0.778
Bra029985 Brassica rapa Bra029985 I 0.769
Bra031834 Brassica rapa Bra031834 I 0.764
Bra033666 Brassica rapa Bra033666 I 0.796
Bra037845 Brassica rapa Bra037845 I 0.764
Bra038219 Brassica rapa Bra038219 I 0.778
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.795
BRADI1G16010 Brachypodium distachyon BRADI1G16010 I 0.757
BRADI4G03340 Brachypodium distachyon BRADI4G03340 I 0.781
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.778
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.796
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.796
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.778
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.762
cassava32957.m1 Manihot esculenta cassava32957.m1 I 0.762
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.778
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.763
Ca_01586 Cicer arietinum Ca_01586 I 0.778
Ca_05641 Cicer arietinum Ca_05641 I 0.772
Ca_18364 Cicer arietinum Ca_18364 I 0.778
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.778
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.778
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.778
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.778
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.778
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.778
Cla022966 Citrullus lanatus Cla022966 I 0.760
Cucsa.219210 Cucumis sativus Cucsa.219210 I 0.763
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.778
Cucsa.395710 Cucumis sativus Cucsa.395710 I 0.760
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.772
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.778
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.778
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I 0.764
fgenesh1_pm.C_scaffold_1003183 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003183 I 0.762
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.798
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.778
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.778
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.778
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.778
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.772
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.778
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.778
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.768
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.778
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.778
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.768
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.778
GSMUA_Achr5G08730_001 Musa acuminata GSMUA_Achr5G08730_001 I 0.762
LPERR03G19200 Leersia perrieri LPERR03G19200 I 0.757
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.762
MDP0000198015 Malus domestica MDP0000198015 I 0.778
MDP0000319225 Malus domestica MDP0000319225 I 0.778
MDP0000573176 Malus domestica MDP0000573176 I 0.778
MDP0000762756 Malus domestica MDP0000762756 I 0.778
mgf006006m Mimulus guttatus mgf006006m I 0.765
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.762
MLOC_54674 Hordeum vulgare MLOC_54674 I 0.766
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.777
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.778
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.778
OB03G31780 Oryza brachyantha OB03G31780 I 0.757
OB03G42170 Oryza brachyantha OB03G42170 I 0.758
OBART03G22570 Oryza barthii OBART03G22570 I 0.757
OGLUM03G23350 Oryza glumaepatula OGLUM03G23350 I 0.757
OLONG_027628 Oryza longistaminata OLONG_027628 I 0.757
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.766
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.778
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.778
ORGLA03G0210300 Oryza glaberrima ORGLA03G0210300 I 0.757
ORUFI03G23240 Oryza rufipogon ORUFI03G23240 I 0.757
OS03G0437200 Oryza sativa OS03G0437200 I 0.757
OS12G0583700 Oryza sativa OS12G0583700 I 0.766
Pavir.Ba01050 Panicum virgatum Pavir.Ba01050 I 0.769
Pavir.J15191 Panicum virgatum Pavir.J15191 I 0.769
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.763
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.768
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.780
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.763
PK10188.1 Cannabis sativa PK10188.1 I 0.778
Pm005390 Prunus mume Pm005390 I 0.778
Pm021284 Prunus mume Pm021284 I 0.778
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.777
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.772
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.778
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.778
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.768
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.772
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.772
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.778
Sb02g038070 Sorghum bicolor Sb02g038070 I 0.769
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.802
AZF3 Arabidopsis lyrata scaffold_800768.1 I 0.790
Si023013m.g Setaria italica Si023013m.g I 0.766
Si032711m.g Setaria italica Si032711m.g I 0.769
Solyc01g107170.2 Solanum lycopersicum Solyc01g107170.2 I 0.786
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.765
TCM_000780 Theobroma cacao TCM_000780 I 0.774
TCM_007214 Theobroma cacao TCM_007214 I 0.778
TCM_034720 Theobroma cacao TCM_034720 I 0.778
Thhalv10006508m.g Eutrema salsugineum Thhalv10006508m.g I 0.776
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.769
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.802
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.778
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.772
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.772
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.779
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.778