SCRT1 (Dasypus novemcinctus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSDNOG00000043826 T092506_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.827 1.000
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.827 1.000
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.827 1.000
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.827 1.000
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.786 0.885
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.786 0.885
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.786 0.885
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.785 0.858
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.785 0.858
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.785 0.858
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.785 0.858
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.767 0.814
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.767 0.814
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.767 0.814
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDNOP00000033571 C2H2 ZF 190 212
ENSDNOP00000033571 C2H2 ZF 222 243
ENSDNOP00000033571 C2H2 ZF 247 269
ENSDNOP00000033571 C2H2 ZF 275 297
ENSDNOP00000033571 C2H2 ZF 303 324

Links

Other C2H2 ZF family TFs
Other Dasypus novemcinctus TFs

195 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29794.m003368 Ricinus communis 29794.m003368 N 0.000
SIGC Arabidopsis lyrata Al_scaffold_0005_2291 N 0.000
SIGC Arabidopsis thaliana AT3G53920 N 0.000
Bo4g120510 Brassica oleracea Bo4g120510 N 0.000
Bostr.11793s0002 Boechera stricta Bostr.11793s0002 N 0.000
Bra014857 Brassica rapa Bra014857 N 0.000
Cagra.2252s0020 Capsella grandiflora Cagra.2252s0020 N 0.000
Carubv10016920m.g Capsella rubella Carubv10016920m.g N 0.000
cassava18263.valid.m1 Manihot esculenta cassava18263.valid.m1 N 0.000
Ca_14896 Cicer arietinum Ca_14896 N 0.000
Ciclev10007968m.g Citrus clementina Ciclev10007968m.g N 0.000
gene09028-v1.0-hybrid Fragaria vesca gene09028-v1.0-hybrid N 0.000
GLYMA17G26620 Glycine max GLYMA17G26620 N 0.000
Gorai.010G103500 Gossypium raimondii Gorai.010G103500 N 0.000
GSMUA_Achr4G01060_001 Musa acuminata GSMUA_Achr4G01060_001 N 0.000
MDP0000135483 Malus domestica MDP0000135483 N 0.000
MDP0000315125 Malus domestica MDP0000315125 N 0.000
mgf012819m Mimulus guttatus mgf012819m N 0.000
MTR_1g007370 Medicago truncatula MTR_1g007370 N 0.000
orange1.1g009449m.g Citrus sinensis orange1.1g009449m.g N 0.000
PDK_20s1533271g001 Phoenix dactylifera PDK_20s1533271g001 N 0.000
PGSC0003DMG400025465 Solanum tuberosum PGSC0003DMG400025465 N 0.000
PK05603.1 Cannabis sativa PK05603.1 N 0.000
Pm005208 Prunus mume Pm005208 N 0.000
PRUPE_ppa003696mg Prunus persica PRUPE_ppa003696mg N 0.000
SapurV1A.0890s0100 Salix purpurea SapurV1A.0890s0100 N 0.000
Solyc08g065970.2 Solanum lycopersicum Solyc08g065970.2 N 0.000
TCM_037242 Theobroma cacao TCM_037242 N 0.000
Thhalv10010251m.g Eutrema salsugineum Thhalv10010251m.g N 0.000
SIGC Vitis vinifera VIT_04s0008g00600 N 0.000