Myotis_brandtii_PRDM6_10015768 (Myotis brandtii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Myotis_brandtii_PRDM6_10015768 T136101_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM6
M08277_2.00 		Homo sapiens
TTTTYYWBHHTTTYYHYTBYN
NRVARDRRAAADDVWRRAAAA		 ChIP-seq
Schmitges et al.(2016)
Q9NQX0.MEME 		0.827 1.000
PRDM6
M08855_2.00 		Homo sapiens
NNKTTTTCYYBYB
VRVRRGAAAAMNN		 Misc
Kulakovskiy et al.(2013)
PRDM6_HUMAN.H11MO.0.C 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Myotis_brandtii_PRDM6_10015768 C2H2 ZF 225 246
Myotis_brandtii_PRDM6_10015768 C2H2 ZF 253 275
Myotis_brandtii_PRDM6_10015768 C2H2 ZF 281 303
Myotis_brandtii_PRDM6_10015768 C2H2 ZF 309 330

Links

Other C2H2 ZF family TFs
Other Myotis brandtii TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27613.m000642 Ricinus communis 27613.m000642 N 0.000
29949.m000124 Ricinus communis 29949.m000124 N 0.000
Aquca_005_00234 Aquilegia coerulea Aquca_005_00234 N 0.000
Bostr.26675s0117 Boechera stricta Bostr.26675s0117 N 0.000
cassava10826.m1 Manihot esculenta cassava10826.m1 N 0.000
cassava34699.m1 Manihot esculenta cassava34699.m1 N 0.000
Ca_09696 Cicer arietinum Ca_09696 N 0.000
Ca_09786 Cicer arietinum Ca_09786 N 0.000
Ca_13855 Cicer arietinum Ca_13855 N 0.000
chr6.LjT11E14.20.nc Lotus japonicus chr6.LjT11E14.20.nc N 0.000
Ciclev10007927m.g Citrus clementina Ciclev10007927m.g N 0.000
Cucsa.120390 Cucumis sativus Cucsa.120390 N 0.000
Eucgr.A01051 Eucalyptus grandis Eucgr.A01051 N 0.000
Eucgr.F03523 Eucalyptus grandis Eucgr.F03523 N 0.000
evm.TU.supercontig_12.194 Carica papaya evm.TU.supercontig_12.194 N 0.000
evm.TU.supercontig_136.17 Carica papaya evm.TU.supercontig_136.17 N 0.000
SCL5 Arabidopsis lyrata fgenesh2_kg.1__4145__AT1G50600.1 N 0.000
gene03551-v1.0-hybrid Fragaria vesca gene03551-v1.0-hybrid N 0.000
gene21592-v1.0-hybrid Fragaria vesca gene21592-v1.0-hybrid N 0.000
GLYMA02G46730 Glycine max GLYMA02G46730 N 0.000
GLYMA08G43780 Glycine max GLYMA08G43780 N 0.000
GLYMA09G22110 Glycine max GLYMA09G22110 N 0.000
GLYMA14G01020 Glycine max GLYMA14G01020 N 0.000
GLYMA18G09030 Glycine max GLYMA18G09030 N 0.000
Gorai.001G192800 Gossypium raimondii Gorai.001G192800 N 0.000
Gorai.002G096300 Gossypium raimondii Gorai.002G096300 N 0.000
Gorai.007G167000 Gossypium raimondii Gorai.007G167000 N 0.000
Gorai.009G446100 Gossypium raimondii Gorai.009G446100 N 0.000
LjSGA_018703.2 Lotus japonicus LjSGA_018703.2 N 0.000
MDP0000152670 Malus domestica MDP0000152670 N 0.000
MDP0000205236 Malus domestica MDP0000205236 N 0.000
MDP0000284679 Malus domestica MDP0000284679 N 0.000
MDP0000804652 Malus domestica MDP0000804652 N 0.000
MTR_3g056110 Medicago truncatula MTR_3g056110 N 0.000
MTR_5g094450 Medicago truncatula MTR_5g094450 N 0.000
MTR_5g097480 Medicago truncatula MTR_5g097480 N 0.000
PK15082.1 Cannabis sativa PK15082.1 N 0.000
Pm012019 Prunus mume Pm012019 N 0.000
Pm015021 Prunus mume Pm015021 N 0.000
SCL5 Populus trichocarpa POPTR_0001s37270 N 0.000
PRUPE_ppa003702mg Prunus persica PRUPE_ppa003702mg N 0.000
PRUPE_ppa004136mg Prunus persica PRUPE_ppa004136mg N 0.000
SapurV1A.0030s0420 Salix purpurea SapurV1A.0030s0420 N 0.000
TCM_002319 Theobroma cacao TCM_002319 N 0.000
TCM_030733 Theobroma cacao TCM_030733 N 0.000
VIT_12s0057g00560 Vitis vinifera VIT_12s0057g00560 N 0.000
SCL5 Vitis vinifera VIT_19s0090g01740 N 0.000