GG21252 (Drosophila erecta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 FBgn0113432 T217727_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
cad
M03780_2.00 		Drosophila melanogaster
NKTTTATKRCHB
VDGYMATAAAMN		 SELEX
Nitta et al.(2015)
cad_1 		0.867 1.000
cad
M03781_2.00 		Drosophila melanogaster
NDTTTATKRCHN
NDGYMATAAAHN		 SELEX
Nitta et al.(2015)
cad_2 		0.867 1.000
cad
M03782_2.00 		Drosophila melanogaster
NDTTTATKRCNB
VNGYMATAAAHN		 SELEX
Nitta et al.(2015)
cad_3 		0.867 1.000
cad
M03783_2.00 		Drosophila melanogaster
NNTTTAYGRYNN
NNRYCRTAAANN		 SELEX
Nitta et al.(2015)
cad_4 		0.867 1.000
cad
M06223_2.00 		Drosophila melanogaster
HTTWATTR
YAATWAAD		 B1H
Zhu et al.(2011)
Cad_Cell_FBgn0000251 		0.867 1.000
cad
M06224_2.00 		Drosophila melanogaster
RBYVDAAMV
BKTTHBRVY		 B1H
Zhu et al.(2011)
cad_FlyReg_FBgn0000251 		0.867 1.000
cad
M06225_2.00 		Drosophila melanogaster
NTTWATKR
YMATWAAN		 B1H
Zhu et al.(2011)
Cad_SOLEXA_FBgn0000251 		0.867 1.000
cad
M08420_2.00 		Drosophila melanogaster
DTTTTATKRYY
RRYMATAAAAH		 ChIP-chip
Mathelier et al.(2014)
MA0216.2 		0.867 1.000
cad
M09580_2.00 		Drosophila melanogaster
DTTTAYGRYN
NRYCRTAAAH		 Misc
Heinz et al.(2010)
Drosophila-Embryos_modEncode 		0.867 1.000
cad
M09674_2.00 		Drosophila melanogaster
HTTTATKRBY
RVYMATAAAD		 Misc
Kulakovskiy et al.(2009)
cad 		0.867 1.000
cad
M10783_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$CAD_Q6 		0.867 1.000
Cdx2
M00447_2.00 		Mus musculus
NWWAYDRNN
NNYHRTWWN		 PBM
Berger et al.(2008)
Cdx2_4272 		0.851 0.895
Cdx2
M09193_2.00 		Mus musculus
BTTTATKRCYBY
RVRGYMATAAAV		 Misc
Kulakovskiy et al.(2013)
CDX2_MOUSE.H11MO.0.A 		0.851 0.895
Cdx2
M09572_2.00 		Mus musculus
NTTTTATKRC
GYMATAAAAN		 Misc
Heinz et al.(2010)
mES-Cdx2_GSE14586 		0.851 0.895
CDX2
M03196_2.00 		Homo sapiens
KTTTATKRB
VYMATAAAM		 SELEX
Jolma et al.(2013)
CDX2_1 		0.851 0.877
CDX2
M05248_2.00 		Homo sapiens
NDTWAYRRYN
NRYYRTWAHN		 SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_1 		0.851 0.877
CDX2
M05249_2.00 		Homo sapiens
NDWWATKRB
VYMATWWHN		 SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_2 		0.851 0.877
CDX2
M08131_2.00 		Homo sapiens
YTTTATKRCHB
VDGYMATAAAR		 ChIP-seq
Mathelier et al.(2014)
MA0465.1 		0.851 0.877
CDX2
M09152_2.00 		Homo sapiens
DTTBATKGCHNB
VNDGCMATVAAH		 Misc
Kulakovskiy et al.(2013)
CDX2_HUMAN.H11MO.0.A 		0.851 0.877
CDX2
M10723_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q5_01 		0.851 0.877
CDX2
M10724_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q5_02 		0.851 0.877
CDX2
M10725_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q5 		0.851 0.877
CDX2
M10726_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q6 		0.851 0.877
CDX2
M05250_2.00 		Homo sapiens
NRTCGTAWHBNN
NNVDWTACGAYN		 SELEX
Yin et al.(2017)
CDX2_eDBD_Methyl-HT-SELEX 		0.851 0.877
Cdx1
M00427_2.00 		Mus musculus
NWWATDRNN
NNYHATWWN		 PBM
Berger et al.(2008)
Cdx1_2245 		0.840 0.860
CDX1
M03115_2.00 		Homo sapiens
NTTTATKRB
VYMATAAAN		 SELEX
Jolma et al.(2013)
CDX1_1 		0.840 0.860
CDX1
M05018_2.00 		Homo sapiens
VKTTTATKRCN
NGYMATAAAMB		 SELEX
Yin et al.(2017)
CDX1_eDBD_HT-SELEX 		0.840 0.860
CDX1
M09140_2.00 		Homo sapiens
HCWTAAAD
HTTTAWGD		 Misc
Kulakovskiy et al.(2013)
CDX1_HUMAN.H11MO.0.C 		0.840 0.860
Cdx1
M09186_2.00 		Mus musculus
HCWTAAAD
HTTTAWGD		 Misc
Kulakovskiy et al.(2013)
CDX1_MOUSE.H11MO.0.C 		0.840 0.860
CDX1
M10670_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX1_Q4 		0.840 0.860
CDX1
M10671_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX1_Q5 		0.840 0.860
CDX1
M05019_2.00 		Homo sapiens
NGTCGTAAAWB
VWTTTACGACN		 SELEX
Yin et al.(2017)
CDX1_eDBD_Methyl-HT-SELEX 		0.840 0.860
CDX1
M10761_2.00 		Gallus gallus
BDBWAAK
MTTWVHV		 Transfac
Matys et al.(2006)
V$CDXA_01 		0.840 0.842
CDX1
M10762_2.00 		Gallus gallus
WWWWMYR
YRKWAWW		 Transfac
Matys et al.(2006)
V$CDXA_02 		0.840 0.842
Q70LF3_ARTSF
M02211_2.00 		Artemia franciscana
BTAATTAB
VTAATTAV		 PBM
Weirauch et al.(2014)
pTH5553 		0.819 0.825
Cdx4
M09197_2.00 		Mus musculus
WGATTTATDRBH
DVYHATAAATCW		 Misc
Kulakovskiy et al.(2013)
CDX4_MOUSE.H11MO.0.A 		0.808 0.842
CDX4
M05129_2.00 		Homo sapiens
VKTTTATKRCH
DGYMATAAAMB		 SELEX
Yin et al.(2017)
CDX4_FL_HT-SELEX 		0.808 0.825
CDX4
M05130_2.00 		Homo sapiens
BGTCGTAAAHN
NDTTTACGACV		 SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_1 		0.808 0.825
CDX4
M05131_2.00 		Homo sapiens
VKTTTATKGCN
NGCMATAAAMB		 SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_2 		0.808 0.825
pal-1
M02183_2.00 		Caenorhabditis elegans
GYAATWAA
TTWATTRC		 PBM
Weirauch et al.(2014)
pTH6016 		0.647 0.702
Q9GP48_9TURB
M02217_2.00 		Discocelis tigrina
DTAATTAB
VTAATTAH		 PBM
Weirauch et al.(2014)
pTH6515 		0.637 0.719
Hoxa13
M00473_2.00 		Mus musculus
NTTWAYDRN
NYHRTWAAN		 PBM
Berger et al.(2008)
Hoxa13_3126 		0.611 0.544
HOXA13
M03098_2.00 		Homo sapiens
DKTTTATKRS
SYMATAAAMH		 SELEX
Jolma et al.(2013)
HOXA13_1 		0.611 0.544
HOXA13
M03099_2.00 		Homo sapiens
NCTCGTAAAHN
NDTTTACGAGN		 SELEX
Jolma et al.(2013)
HOXA13_2 		0.611 0.544
HOXA13
M03100_2.00 		Homo sapiens
DKTTTATKRS
SYMATAAAMH		 SELEX
Jolma et al.(2013)
HOXA13_3 		0.611 0.544
HOXA13
M03101_2.00 		Homo sapiens
NCTCGTAAAAH
DTTTTACGAGN		 SELEX
Jolma et al.(2013)
HOXA13_4 		0.611 0.544
HOXA13
M04977_2.00 		Homo sapiens
DTTTTATKGGB
VCCMATAAAAH		 SELEX
Yin et al.(2017)
HOXA13_eDBD_HT-SELEX_1 		0.611 0.544
HOXA13
M04978_2.00 		Homo sapiens
NCTCGTAAAHN
NDTTTACGAGN		 SELEX
Yin et al.(2017)
HOXA13_eDBD_HT-SELEX_2 		0.611 0.544
HOXA13
M04981_2.00 		Homo sapiens
DTTTTATKRSN
NSYMATAAAAH		 SELEX
Yin et al.(2017)
HOXA13_FL_HT-SELEX_1 		0.611 0.544
HOXA13
M04982_2.00 		Homo sapiens
NCTCGTAAAWH
DWTTTACGAGN		 SELEX
Yin et al.(2017)
HOXA13_FL_HT-SELEX_2 		0.611 0.544
HOXA13
M09134_2.00 		Homo sapiens
VDTWTWATKGS
SCMATWAWAHB		 Misc
Kulakovskiy et al.(2013)
HXA13_HUMAN.H11MO.0.C 		0.611 0.544
Hoxa13
M09202_2.00 		Mus musculus
VDTWTWATKGS
SCMATWAWAHB		 Misc
Kulakovskiy et al.(2013)
HXA13_MOUSE.H11MO.0.C 		0.611 0.544
HOXA13
M10653_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA13_01 		0.611 0.544
HOXA13
M10654_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA13_02 		0.611 0.544
HOXA13
M04979_2.00 		Homo sapiens
DTTTTATTRSN
NSYAATAAAAH		 SELEX
Yin et al.(2017)
HOXA13_eDBD_Methyl-HT-SELEX_1 		0.611 0.544
HOXA13
M04980_2.00 		Homo sapiens
NCTCGTAAAHN
NDTTTACGAGN		 SELEX
Yin et al.(2017)
HOXA13_eDBD_Methyl-HT-SELEX_2 		0.611 0.544
HOXA13
M04983_2.00 		Homo sapiens
DKTTTATTGBN
NVCAATAAAMH		 SELEX
Yin et al.(2017)
HOXA13_FL_Methyl-HT-SELEX_1 		0.611 0.544
HOXA13
M04984_2.00 		Homo sapiens
NCTCGTAAAWH
DWTTTACGAGN		 SELEX
Yin et al.(2017)
HOXA13_FL_Methyl-HT-SELEX_2 		0.611 0.544
Hoxc13
M00389_2.00 		Mus musculus
NTTWAYDRNN
NNYHRTWAAN		 PBM
Berger et al.(2008)
Hoxc13_3127 		0.606 0.561
HOXC13
M03129_2.00 		Homo sapiens
NTTTTATTRS
SYAATAAAAN		 SELEX
Jolma et al.(2013)
HOXC13_1 		0.606 0.561
HOXC13
M03130_2.00 		Homo sapiens
NCTCGTAAAAH
DTTTTACGAGN		 SELEX
Jolma et al.(2013)
HOXC13_2 		0.606 0.561
HOXC13
M05072_2.00 		Homo sapiens
RKTTTATKGSN
NSCMATAAAMY		 SELEX
Yin et al.(2017)
HOXC13_eDBD_HT-SELEX_1 		0.606 0.561
HOXC13
M05073_2.00 		Homo sapiens
BCTCGTAAAMH
DKTTTACGAGV		 SELEX
Yin et al.(2017)
HOXC13_eDBD_HT-SELEX_2 		0.606 0.561
HOXC13
M10680_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXC13_Q2 		0.606 0.561
HOXC13
M05074_2.00 		Homo sapiens
BCTCGTAAAAH
DTTTTACGAGV		 SELEX
Yin et al.(2017)
HOXC13_eDBD_Methyl-HT-SELEX 		0.606 0.561
Q24782_9CNID
M02206_2.00 		Eleutheria dichotoma
TTAATTAA
TTAATTAA		 PBM
Weirauch et al.(2014)
pTH5486 		0.600 0.526
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0139798 Homeodomain 286 342

Links

Other Homeodomain family TFs
Other Drosophila erecta TFs

400 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_027_00077 Aquilegia coerulea Aquca_027_00077 I 0.000
S1FA2 Arabidopsis thaliana AT2G37120 I 0.000
S1FA3 Arabidopsis thaliana AT3G09735 D 0.000
S1FA1 Arabidopsis thaliana AT3G53370 I 0.000
Bo00703s130 Brassica oleracea Bo00703s130 I 0.000
Bo00703s150 Brassica oleracea Bo00703s150 I 0.000
Bo1g144300 Brassica oleracea Bo1g144300 I 0.000
Bo5g138130 Brassica oleracea Bo5g138130 I 0.000
Bo6g067310 Brassica oleracea Bo6g067310 I 0.000
Bostr.11793s0058 Boechera stricta Bostr.11793s0058 I 0.000
Bostr.22252s0094 Boechera stricta Bostr.22252s0094 I 0.000
Bostr.23794s0377 Boechera stricta Bostr.23794s0377 I 0.000
Bra003132 Brassica rapa Bra003132 I 0.000
Bra006994 Brassica rapa Bra006994 I 0.000
Bra029784 Brassica rapa Bra029784 I 0.000
Bra034084 Brassica rapa Bra034084 I 0.000
Bra039779 Brassica rapa Bra039779 I 0.000
Cagra.0612s0062 Capsella grandiflora Cagra.0612s0062 I 0.000
Cagra.0666s0032 Capsella grandiflora Cagra.0666s0032 I 0.000
Cagra.2515s0064 Capsella grandiflora Cagra.2515s0064 I 0.000
Carubv10015035m.g Capsella rubella Carubv10015035m.g I 0.000
Carubv10018341m.g Capsella rubella Carubv10018341m.g I 0.000
Carubv10025429m.g Capsella rubella Carubv10025429m.g I 0.000
chr1.CM0033.550.nc Lotus japonicus chr1.CM0033.550.nc I 0.000
Ciclev10013218m.g Citrus clementina Ciclev10013218m.g I 0.000
Cla018106 Citrullus lanatus Cla018106 I 0.000
Cucsa.124240 Cucumis sativus Cucsa.124240 I 0.000
Cucsa.307040 Cucumis sativus Cucsa.307040 I 0.000
evm.TU.supercontig_638.2 Carica papaya evm.TU.supercontig_638.2 I 0.000
fgenesh1_pm.C_scaffold_5001425 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001425 I 0.000
fgenesh2_kg.3__997__AT3G09735.1 Arabidopsis lyrata fgenesh2_kg.3__997__AT3G09735.1 I 0.000
gene09647-v1.0-hybrid Fragaria vesca gene09647-v1.0-hybrid N 0.000
GLYMA03G33640 Glycine max GLYMA03G33640 I 0.000
GLYMA10G05790 Glycine max GLYMA10G05790 I 0.000
GLYMA13G20160 Glycine max GLYMA13G20160 I 0.000
GLYMA19G36350 Glycine max GLYMA19G36350 I 0.000
Gorai.002G249300 Gossypium raimondii Gorai.002G249300 I 0.000
Gorai.006G168100 Gossypium raimondii Gorai.006G168100 I 0.000
Gorai.009G419300 Gossypium raimondii Gorai.009G419300 I 0.000
GSMUA_Achr10G13120_001 Musa acuminata GSMUA_Achr10G13120_001 I 0.000
LPERR04G08410 Leersia perrieri LPERR04G08410 I 0.000
Lus10015073.g Linum usitatissimum Lus10015073.g I 0.000
Lus10023177.g Linum usitatissimum Lus10023177.g I 0.000
mgf000337m Mimulus guttatus mgf000337m I 0.000
mgf004062m Mimulus guttatus mgf004062m I 0.000
MTR_7g100880 Medicago truncatula MTR_7g100880 I 0.000
MTR_7g100890 Medicago truncatula MTR_7g100890 I 0.000
MTR_7g100905 Medicago truncatula MTR_7g100905 I 0.000
orange1.1g044991m.g Citrus sinensis orange1.1g044991m.g I 0.000
PGSC0003DMG400001772 Solanum tuberosum PGSC0003DMG400001772 I 0.000
PGSC0003DMG400020934 Solanum tuberosum PGSC0003DMG400020934 I 0.000
PK08477.1 Cannabis sativa PK08477.1 I 0.000
POPTR_0006s13230 Populus trichocarpa POPTR_0006s13230 I 0.000
POPTR_0016s08890 Populus trichocarpa POPTR_0016s08890 I 0.000
SapurV1A.0112s0080 Salix purpurea SapurV1A.0112s0080 I 0.000
SapurV1A.0209s0130 Salix purpurea SapurV1A.0209s0130 I 0.000
scaffold_402348.1 Arabidopsis lyrata scaffold_402348.1 I 0.000
Solyc09g007500.2 Solanum lycopersicum Solyc09g007500.2 I 0.000
TCM_022113 Theobroma cacao TCM_022113 I 0.000
Thhalv10010878m.g Eutrema salsugineum Thhalv10010878m.g I 0.000
Thhalv10017496m.g Eutrema salsugineum Thhalv10017496m.g I 0.000
Thhalv10021874m.g Eutrema salsugineum Thhalv10021874m.g I 0.000
VIT_06s0004g03160 Vitis vinifera VIT_06s0004g03160 I 0.000