30190.m011307 (Ricinus communis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 30190.m011307 T227021_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.789 0.754
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30190.m011307 Homeodomain 29 85

Links

Other Homeodomain family TFs
Other Ricinus communis TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29983.m003128 Ricinus communis 29983.m003128 I 0.620
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I 0.615
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.656
RLT1 Arabidopsis thaliana AT1G28420 D 0.789
RLT2 Arabidopsis thaliana AT5G44180 I 0.600
BGIOSGA004179 Oryza indica BGIOSGA004179 I 0.613
BGIOSGA022450 Oryza indica BGIOSGA022450 I 0.618
Bo3g143570 Brassica oleracea Bo3g143570 I 0.761
Bo5g055970 Brassica oleracea Bo5g055970 I 0.793
Bo7g067190 Brassica oleracea Bo7g067190 I 0.616
Bostr.15697s0165 Boechera stricta Bostr.15697s0165 I 0.797
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.617
Bra010869 Brassica rapa Bra010869 I 0.761
Bra032908 Brassica rapa Bra032908 I 0.793
Bra033725 Brassica rapa Bra033725 I 0.615
BRADI2G16647 Brachypodium distachyon BRADI2G16647 I 0.616
BRADI2G46230 Brachypodium distachyon BRADI2G46230 I 0.611
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.616
Cagra.1822s0015 Capsella grandiflora Cagra.1822s0015 I 0.796
Carubv10025737m.g Capsella rubella Carubv10025737m.g I 0.616
cassava1593.valid.m1 Manihot esculenta cassava1593.valid.m1 I 0.799
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.620
Ca_00337 Cicer arietinum Ca_00337 I 0.794
Ca_06343 Cicer arietinum Ca_06343 I 0.794
Ca_11272 Cicer arietinum Ca_11272 I 0.614
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.615
Ciclev10014023m.g Citrus clementina Ciclev10014023m.g I 0.795
Cla009803 Citrullus lanatus Cla009803 I 0.799
Cucsa.046480 Cucumis sativus Cucsa.046480 I 0.799
Eucgr.D00596 Eucalyptus grandis Eucgr.D00596 I 0.789
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.615
evm.TU.supercontig_27.2 Carica papaya evm.TU.supercontig_27.2 I 0.795
evm.TU.supercontig_83.97 Carica papaya evm.TU.supercontig_83.97 I 0.785
F775_01844 Aegilops tauschii F775_01844 I 0.611
fgenesh1_pg.scaffold_15000027 Physcomitrella patens fgenesh1_pg.scaffold_15000027 I 0.613
HB-1 Arabidopsis lyrata fgenesh2_kg.1__3015__AT1G28420.1 I 0.794
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.617
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.647
gene29752-v1.0-hybrid Fragaria vesca gene29752-v1.0-hybrid I 0.795
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.615
GLYMA07G32180 Glycine max GLYMA07G32180 I 0.790
GLYMA13G24370 Glycine max GLYMA13G24370 I 0.790
GLYMA13G30860 Glycine max GLYMA13G30860 I 0.790
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.615
Gorai.010G243500 Gossypium raimondii Gorai.010G243500 I 0.783
Gorai.010G256900 Gossypium raimondii Gorai.010G256900 I 0.783
GRMZM2G060541 Zea mays GRMZM2G060541 I 0.613
GRMZM2G122750 Zea mays GRMZM2G122750 I 0.621
GRMZM2G125294 Zea mays GRMZM2G125294 I 0.621
GRMZM2G159357 Zea mays GRMZM2G159357 I 0.613
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.639
LPERR01G22320 Leersia perrieri LPERR01G22320 I 0.613
LPERR05G21380 Leersia perrieri LPERR05G21380 I 0.618
Lus10013979.g Linum usitatissimum Lus10013979.g I 0.798
Lus10015325.g Linum usitatissimum Lus10015325.g I 0.792
Lus10015400.g Linum usitatissimum Lus10015400.g I 0.798
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.615
Lus10025454.g Linum usitatissimum Lus10025454.g I 0.792
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.615
MDP0000192108 Malus domestica MDP0000192108 I 0.799
MDP0000288192 Malus domestica MDP0000288192 I 0.811
mgf006635m Mimulus guttatus mgf006635m I 0.806
mgf006858m Mimulus guttatus mgf006858m I 0.821
MLOC_62571 Hordeum vulgare MLOC_62571 I 0.611
MTR_2g014490 Medicago truncatula MTR_2g014490 I 0.799
MTR_4g088375 Medicago truncatula MTR_4g088375 I 0.794
OB01G35240 Oryza brachyantha OB01G35240 I 0.613
OBART05G25730 Oryza barthii OBART05G25730 I 0.618
OGLUM01G29920 Oryza glumaepatula OGLUM01G29920 I 0.613
OGLUM05G27370 Oryza glumaepatula OGLUM05G27370 I 0.618
OMERI01G23740 Oryza meridionalis OMERI01G23740 I 0.613
ONIVA01G29520 Oryza nivara ONIVA01G29520 I 0.613
ONIVA05G27640 Oryza nivara ONIVA05G27640 I 0.618
OPUNC01G25990 Oryza punctata OPUNC01G25990 I 0.613
orange1.1g000279m.g Citrus sinensis orange1.1g000279m.g I 0.795
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I 0.615
ORGLA05G0222200 Oryza glaberrima ORGLA05G0222200 I 0.618
ORUFI01G29060 Oryza rufipogon ORUFI01G29060 I 0.613
ORUFI05G27630 Oryza rufipogon ORUFI05G27630 I 0.618
OS01G0672201 Oryza sativa OS01G0672201 I 0.613
Pavir.Ca00923 Panicum virgatum Pavir.Ca00923 I 0.618
Pavir.J20612 Panicum virgatum Pavir.J20612 I 0.618
PK06068.1 Cannabis sativa PK06068.1 I 0.615
PK13272.1 Cannabis sativa PK13272.1 I 0.794
Pm010098 Prunus mume Pm010098 I 0.799
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.619
POPTR_0011s05660 Populus trichocarpa POPTR_0011s05660 I 0.784
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.620
PRUPE_ppa000115mg Prunus persica PRUPE_ppa000115mg I 0.799
SapurV1A.0012s0660 Salix purpurea SapurV1A.0012s0660 I 0.795
SapurV1A.0032s0540 Salix purpurea SapurV1A.0032s0540 I 0.793
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.619
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.620
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.619
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.619
Sb03g030770 Sorghum bicolor Sb03g030770 I 0.613
Sb03g030782 Sorghum bicolor Sb03g030782 I 0.613
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.620
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.620
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.619
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.619
Si004333m.g Setaria italica Si004333m.g I 0.613
Si020949m.g Setaria italica Si020949m.g I 0.619
Solyc02g077660.2 Solanum lycopersicum Solyc02g077660.2 I 0.795
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I 0.620
TCM_008214 Theobroma cacao TCM_008214 I 0.615
TCM_029805 Theobroma cacao TCM_029805 I 0.783
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.617
Thhalv10006543m.g Eutrema salsugineum Thhalv10006543m.g I 0.795
VIT_10s0003g00290 Vitis vinifera VIT_10s0003g00290 I 0.793
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.620