cassava1593.valid.m1 (Manihot esculenta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 cassava1593.valid.m1 T227039_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.855 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava1593.valid.m1 Homeodomain 30 86

Links

Other Homeodomain family TFs
Other Manihot esculenta TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29983.m003128 Ricinus communis 29983.m003128 I 0.676
30190.m011307 Ricinus communis 30190.m011307 I 0.799
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I 0.627
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.723
RLT1 Arabidopsis thaliana AT1G28420 D 0.855
RLT2 Arabidopsis thaliana AT5G44180 I 0.664
BGIOSGA004179 Oryza indica BGIOSGA004179 I 0.649
BGIOSGA022450 Oryza indica BGIOSGA022450 I 0.686
Bo3g143570 Brassica oleracea Bo3g143570 I 0.826
Bo5g055970 Brassica oleracea Bo5g055970 I 0.859
Bo7g067190 Brassica oleracea Bo7g067190 I 0.668
Bostr.15697s0165 Boechera stricta Bostr.15697s0165 I 0.860
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.681
Bra010869 Brassica rapa Bra010869 I 0.826
Bra032908 Brassica rapa Bra032908 I 0.858
Bra033725 Brassica rapa Bra033725 I 0.667
BRADI2G16647 Brachypodium distachyon BRADI2G16647 I 0.650
BRADI2G46230 Brachypodium distachyon BRADI2G46230 I 0.647
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.680
Cagra.1822s0015 Capsella grandiflora Cagra.1822s0015 I 0.859
Carubv10025737m.g Capsella rubella Carubv10025737m.g I 0.680
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.676
Ca_00337 Cicer arietinum Ca_00337 I 0.862
Ca_06343 Cicer arietinum Ca_06343 I 0.862
Ca_11272 Cicer arietinum Ca_11272 I 0.681
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.671
Ciclev10014023m.g Citrus clementina Ciclev10014023m.g I 0.862
Cla009803 Citrullus lanatus Cla009803 I 0.867
Cucsa.046480 Cucumis sativus Cucsa.046480 I 0.867
Eucgr.D00596 Eucalyptus grandis Eucgr.D00596 I 0.834
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.671
evm.TU.supercontig_27.2 Carica papaya evm.TU.supercontig_27.2 I 0.862
evm.TU.supercontig_83.97 Carica papaya evm.TU.supercontig_83.97 I 0.778
F775_01844 Aegilops tauschii F775_01844 I 0.647
fgenesh1_pg.scaffold_15000027 Physcomitrella patens fgenesh1_pg.scaffold_15000027 I 0.633
HB-1 Arabidopsis lyrata fgenesh2_kg.1__3015__AT1G28420.1 I 0.859
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.681
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.649
gene29752-v1.0-hybrid Fragaria vesca gene29752-v1.0-hybrid I 0.862
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.659
GLYMA07G32180 Glycine max GLYMA07G32180 I 0.857
GLYMA13G24370 Glycine max GLYMA13G24370 I 0.857
GLYMA13G30860 Glycine max GLYMA13G30860 I 0.857
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.671
Gorai.010G243500 Gossypium raimondii Gorai.010G243500 I 0.850
Gorai.010G256900 Gossypium raimondii Gorai.010G256900 I 0.850
GRMZM2G060541 Zea mays GRMZM2G060541 I 0.649
GRMZM2G122750 Zea mays GRMZM2G122750 I 0.641
GRMZM2G125294 Zea mays GRMZM2G125294 I 0.641
GRMZM2G159357 Zea mays GRMZM2G159357 I 0.649
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.675
LPERR01G22320 Leersia perrieri LPERR01G22320 I 0.649
LPERR05G21380 Leersia perrieri LPERR05G21380 I 0.686
Lus10013979.g Linum usitatissimum Lus10013979.g I 0.854
Lus10015325.g Linum usitatissimum Lus10015325.g I 0.838
Lus10015400.g Linum usitatissimum Lus10015400.g I 0.866
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.639
Lus10025454.g Linum usitatissimum Lus10025454.g I 0.838
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.639
MDP0000192108 Malus domestica MDP0000192108 I 0.867
MDP0000288192 Malus domestica MDP0000288192 I 0.855
mgf006635m Mimulus guttatus mgf006635m I 0.808
mgf006858m Mimulus guttatus mgf006858m I 0.825
MLOC_62571 Hordeum vulgare MLOC_62571 I 0.647
MTR_2g014490 Medicago truncatula MTR_2g014490 I 0.867
MTR_4g088375 Medicago truncatula MTR_4g088375 I 0.862
OB01G35240 Oryza brachyantha OB01G35240 I 0.649
OBART05G25730 Oryza barthii OBART05G25730 I 0.686
OGLUM01G29920 Oryza glumaepatula OGLUM01G29920 I 0.649
OGLUM05G27370 Oryza glumaepatula OGLUM05G27370 I 0.686
OMERI01G23740 Oryza meridionalis OMERI01G23740 I 0.649
ONIVA01G29520 Oryza nivara ONIVA01G29520 I 0.649
ONIVA05G27640 Oryza nivara ONIVA05G27640 I 0.686
OPUNC01G25990 Oryza punctata OPUNC01G25990 I 0.649
orange1.1g000279m.g Citrus sinensis orange1.1g000279m.g I 0.862
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I 0.671
ORGLA05G0222200 Oryza glaberrima ORGLA05G0222200 I 0.686
ORUFI01G29060 Oryza rufipogon ORUFI01G29060 I 0.649
ORUFI05G27630 Oryza rufipogon ORUFI05G27630 I 0.686
OS01G0672201 Oryza sativa OS01G0672201 I 0.649
Pavir.Ca00923 Panicum virgatum Pavir.Ca00923 I 0.642
Pavir.J20612 Panicum virgatum Pavir.J20612 I 0.642
PK06068.1 Cannabis sativa PK06068.1 I 0.683
PK13272.1 Cannabis sativa PK13272.1 I 0.860
Pm010098 Prunus mume Pm010098 I 0.867
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.675
POPTR_0011s05660 Populus trichocarpa POPTR_0011s05660 I 0.851
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.676
PRUPE_ppa000115mg Prunus persica PRUPE_ppa000115mg I 0.867
SapurV1A.0012s0660 Salix purpurea SapurV1A.0012s0660 I 0.862
SapurV1A.0032s0540 Salix purpurea SapurV1A.0032s0540 I 0.861
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.675
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.676
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.675
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.675
Sb03g030770 Sorghum bicolor Sb03g030770 I 0.649
Sb03g030782 Sorghum bicolor Sb03g030782 I 0.649
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.640
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.640
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.653
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.653
Si004333m.g Setaria italica Si004333m.g I 0.649
Si020949m.g Setaria italica Si020949m.g I 0.643
Solyc02g077660.2 Solanum lycopersicum Solyc02g077660.2 I 0.840
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I 0.687
TCM_008214 Theobroma cacao TCM_008214 I 0.671
TCM_029805 Theobroma cacao TCM_029805 I 0.850
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.681
Thhalv10006543m.g Eutrema salsugineum Thhalv10006543m.g I 0.860
VIT_10s0003g00290 Vitis vinifera VIT_10s0003g00290 I 0.860
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.687