ACUA002616 (Anopheles culicifacies)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 ACUA002616 T231460_2.00 Vectorbase (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.867 0.982
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.867 0.982
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.867 0.982
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.867 0.982
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.867 0.965
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.867 0.965
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.867 0.965
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.867 0.965
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.867 0.965
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.865 0.965
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.865 0.965
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.865 0.965
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.865 0.965
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.965
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.865 0.965
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.947
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.859 0.947
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ACUA002616-PA Homeodomain 159 215

Links

Other Homeodomain family TFs
Other Anopheles culicifacies TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29727.m000472 Ricinus communis 29727.m000472 I
29814.m000741 Ricinus communis 29814.m000741 I
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I
AMTR_s00007p00263040 Amborella trichopoda AMTR_s00007p00263040 N
AMTR_s00021p00065350 Amborella trichopoda AMTR_s00021p00065350 I
Aquca_020_00550 Aquilegia coerulea Aquca_020_00550 I
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I
ASIL2 Arabidopsis thaliana AT3G14180 D
Bo1g134590 Brassica oleracea Bo1g134590 I
Bostr.28625s0284 Boechera stricta Bostr.28625s0284 I
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I
Bostr.7128s0077 Boechera stricta Bostr.7128s0077 I
Bra014370 Brassica rapa Bra014370 I
Bra037960 Brassica rapa Bra037960 I
Cagra.0769s0020 Capsella grandiflora Cagra.0769s0020 I
Cagra.3631s0002 Capsella grandiflora Cagra.3631s0002 I
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I
Carubv10009310m.g Capsella rubella Carubv10009310m.g I
Carubv10015321m.g Capsella rubella Carubv10015321m.g I
Carubv10015798m.g Capsella rubella Carubv10015798m.g I
cassava116.valid.m1 Manihot esculenta cassava116.valid.m1 I
cassava34877.m1 Manihot esculenta cassava34877.m1 I
cassava47424.m1 Manihot esculenta cassava47424.m1 I
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I
Cla015773 Citrullus lanatus Cla015773 I
Cucsa.359990 Cucumis sativus Cucsa.359990 I
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I
fgenesh1_pg.C_scaffold_3001317 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001317 I
ASIL1 Arabidopsis lyrata fgenesh2_kg.1__4489__AT1G54060.1 I
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N
GLYMA07G04790 Glycine max GLYMA07G04790 I
GLYMA16G01370 Glycine max GLYMA16G01370 I
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I
GSMUA_Achr3G05880_001 Musa acuminata GSMUA_Achr3G05880_001 I
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I
GSMUA_Achr9G14340_001 Musa acuminata GSMUA_Achr9G14340_001 N
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I
Lus10020652.g Linum usitatissimum Lus10020652.g I
MDP0000097759 Malus domestica MDP0000097759 N
MDP0000255104 Malus domestica MDP0000255104 I
MDP0000281471 Malus domestica MDP0000281471 I
MDP0000943251 Malus domestica MDP0000943251 N
mgf000047m Mimulus guttatus mgf000047m I
mgf006505m Mimulus guttatus mgf006505m I
MTR_8g022290 Medicago truncatula MTR_8g022290 I
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I
PGSC0003DMG400037972 Solanum tuberosum PGSC0003DMG400037972 I
PK22475.1 Cannabis sativa PK22475.1 N
Pm013209 Prunus mume Pm013209 I
POPTR_0001s06330 Populus trichocarpa POPTR_0001s06330 N
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I
PRUPE_ppa010427mg Prunus persica PRUPE_ppa010427mg I
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I
SapurV1A.0504s0110 Salix purpurea SapurV1A.0504s0110 N
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I
SapurV1A.2810s0010 Salix purpurea SapurV1A.2810s0010 N
Solyc03g122030.1 Solanum lycopersicum Solyc03g122030.1 I
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I
TCM_029209 Theobroma cacao TCM_029209 I
TCM_042467 Theobroma cacao TCM_042467 N
Thhalv10011582m.g Eutrema salsugineum Thhalv10011582m.g I
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I
VIT_09s0002g00720 Vitis vinifera VIT_09s0002g00720 N