BRADI2G16780 (Brachypodium distachyon)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 BRADI2G16780 T248039_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G58630
M06976_2.00 		Arabidopsis thaliana
HNTCGCCGGARWHDN
NHDWYTCCGGCGAND		 Dap-seq
OMalley et al.(2016)
AT3G58630_col_a 		0.850 0.672
AT3G58630
M06977_2.00 		Arabidopsis thaliana
NNTCGCCGGARWHDN
NHDWYTCCGGCGANN		 Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a 		0.850 0.672
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BRADI2G16780.1 MADF 52 128

Links

Other MADF family TFs
Other Brachypodium distachyon TFs

67 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29900.m001628 Ricinus communis 29900.m001628 I 0.842
AT3G58630 Arabidopsis thaliana AT3G58630 D 0.850
BGIOSGA001035 Oryza indica BGIOSGA001035 N 0.929
BGIOSGA020349 Oryza indica BGIOSGA020349 I 0.964
BGIOSGA020351 Oryza indica BGIOSGA020351 I 0.964
Bo6g075950 Brassica oleracea Bo6g075950 I 0.854
Bostr.20903s0103 Boechera stricta Bostr.20903s0103 I 0.850
Bra003346 Brassica rapa Bra003346 I 0.851
BRADI2G46320 Brachypodium distachyon BRADI2G46320 N 0.938
Cagra.0686s0075 Capsella grandiflora Cagra.0686s0075 I 0.842
Carubv10017646m.g Capsella rubella Carubv10017646m.g I 0.842
cassava21220.m1 Manihot esculenta cassava21220.m1 I 0.842
cassava2218.valid.m1 Manihot esculenta cassava2218.valid.m1 I 0.842
Ca_19877 Cicer arietinum Ca_19877 I 0.838
Cla002288 Citrullus lanatus Cla002288 I 0.819
Cla019967 Citrullus lanatus Cla019967 I 0.839
Cucsa.213110 Cucumis sativus Cucsa.213110 I 0.839
Cucsa.213120 Cucumis sativus Cucsa.213120 I 0.839
evm.TU.supercontig_209.41 Carica papaya evm.TU.supercontig_209.41 I 0.870
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I 0.825
fgenesh2_kg.5__2307__AT3G58630.1 Arabidopsis lyrata fgenesh2_kg.5__2307__AT3G58630.1 I 0.848
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.828
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I 0.831
GLYMA12G33850 Glycine max GLYMA12G33850 I 0.829
GRMZM2G023119 Zea mays GRMZM2G023119 N 0.903
GRMZM2G157219 Zea mays GRMZM2G157219 I 0.957
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.897
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.903
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.907
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I 0.867
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.900
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I 0.850
LPERR01G22430 Leersia perrieri LPERR01G22430 N 0.938
Lus10007273.g Linum usitatissimum Lus10007273.g N 0.855
Lus10015282.g Linum usitatissimum Lus10015282.g I 0.834
Lus10025404.g Linum usitatissimum Lus10025404.g I 0.834
Lus10025406.g Linum usitatissimum Lus10025406.g N 0.868
MDP0000301451 Malus domestica MDP0000301451 I 0.826
mgf006505m Mimulus guttatus mgf006505m I 0.832
MTR_4g079960 Medicago truncatula MTR_4g079960 I 0.822
OBART05G25610 Oryza barthii OBART05G25610 I 0.964
OGLUM01G30050 Oryza glumaepatula OGLUM01G30050 N 0.929
OGLUM05G27260 Oryza glumaepatula OGLUM05G27260 I 0.964
OMERI01G23900 Oryza meridionalis OMERI01G23900 N 0.929
OMERI02G35600 Oryza meridionalis OMERI02G35600 I 0.964
ONIVA01G29560 Oryza nivara ONIVA01G29560 N 0.929
ONIVA05G26860 Oryza nivara ONIVA05G26860 I 0.964
OPUNC01G26130 Oryza punctata OPUNC01G26130 N 0.938
OPUNC05G23220 Oryza punctata OPUNC05G23220 I 0.964
ORGLA01G0214300 Oryza glaberrima ORGLA01G0214300 N 0.929
ORGLA05G0221200 Oryza glaberrima ORGLA05G0221200 I 0.964
ORUFI05G27490 Oryza rufipogon ORUFI05G27490 I 0.964
OS01G0674000 Oryza sativa OS01G0674000 N 0.929
OS05G0560600 Oryza sativa OS05G0560600 I 0.964
Pavir.J11649 Panicum virgatum Pavir.J11649 I 0.960
Pavir.J33948 Panicum virgatum Pavir.J33948 I 0.960
PGSC0003DMG400007806 Solanum tuberosum PGSC0003DMG400007806 I 0.842
PRUPE_ppa008833mg Prunus persica PRUPE_ppa008833mg I 0.824
PRUPE_ppa009171mg Prunus persica PRUPE_ppa009171mg I 0.865
Sb09g028350 Sorghum bicolor Sb09g028350 I 0.951
Si022565m.g Setaria italica Si022565m.g I 0.960
Solyc12g010890.1 Solanum lycopersicum Solyc12g010890.1 I 0.842
TCM_042467 Theobroma cacao TCM_042467 N 0.846
Thhalv10006105m.g Eutrema salsugineum Thhalv10006105m.g I 0.850
TRAES3BF009800030CFD_g Triticum aestivum TRAES3BF009800030CFD_g N 0.929
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I 0.819
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I 0.827