Ciclev10026005m.g (Citrus clementina)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Ciclev10026005m.g T250651_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASIL2
M06973_2.00 		Arabidopsis thaliana
TCRCCGGARAH
DTYTCCGGYGA		 Dap-seq
OMalley et al.(2016)
At3g14180_col 		0.892 0.817
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10026005m MADF 75 152

Links

Other MADF family TFs
Other Citrus clementina TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29727.m000472 Ricinus communis 29727.m000472 I 0.920
29814.m000741 Ricinus communis 29814.m000741 I 0.854
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I 0.925
AMTR_s00007p00263040 Amborella trichopoda AMTR_s00007p00263040 N 0.856
AMTR_s00021p00065350 Amborella trichopoda AMTR_s00021p00065350 I 0.816
Aquca_020_00550 Aquilegia coerulea Aquca_020_00550 I 0.934
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.849
ASIL2 Arabidopsis thaliana AT3G14180 D 0.892
Bo1g134590 Brassica oleracea Bo1g134590 I 0.863
Bostr.28625s0284 Boechera stricta Bostr.28625s0284 I 0.898
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I 0.892
Bostr.7128s0077 Boechera stricta Bostr.7128s0077 I 0.844
Bra014370 Brassica rapa Bra014370 I 0.824
Bra037960 Brassica rapa Bra037960 I 0.814
Cagra.0769s0020 Capsella grandiflora Cagra.0769s0020 I 0.828
Cagra.3631s0002 Capsella grandiflora Cagra.3631s0002 I 0.854
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I 0.892
Carubv10009310m.g Capsella rubella Carubv10009310m.g I 0.828
Carubv10015321m.g Capsella rubella Carubv10015321m.g I 0.892
Carubv10015798m.g Capsella rubella Carubv10015798m.g I 0.839
cassava116.valid.m1 Manihot esculenta cassava116.valid.m1 I 0.920
cassava34877.m1 Manihot esculenta cassava34877.m1 I 0.967
cassava47424.m1 Manihot esculenta cassava47424.m1 I 0.913
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.847
Cla015773 Citrullus lanatus Cla015773 I 0.961
Cucsa.359990 Cucumis sativus Cucsa.359990 I 0.961
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.859
fgenesh1_pg.C_scaffold_3001317 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001317 I 0.899
ASIL1 Arabidopsis lyrata fgenesh2_kg.1__4489__AT1G54060.1 I 0.844
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I 0.892
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I 0.944
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.885
GLYMA07G04790 Glycine max GLYMA07G04790 I 0.956
GLYMA16G01370 Glycine max GLYMA16G01370 I 0.887
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I 0.967
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.967
GSMUA_Achr3G05880_001 Musa acuminata GSMUA_Achr3G05880_001 I 0.844
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I 0.857
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.834
GSMUA_Achr9G14340_001 Musa acuminata GSMUA_Achr9G14340_001 N 0.880
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I 0.924
Lus10020652.g Linum usitatissimum Lus10020652.g I 0.864
MDP0000097759 Malus domestica MDP0000097759 N 0.858
MDP0000255104 Malus domestica MDP0000255104 I 0.941
MDP0000281471 Malus domestica MDP0000281471 I 0.941
MDP0000943251 Malus domestica MDP0000943251 N 0.842
mgf000047m Mimulus guttatus mgf000047m I 0.853
mgf006505m Mimulus guttatus mgf006505m I 0.893
MTR_8g022290 Medicago truncatula MTR_8g022290 I 0.916
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I 0.971
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.847
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I 0.873
PGSC0003DMG400037972 Solanum tuberosum PGSC0003DMG400037972 I 0.937
PK22475.1 Cannabis sativa PK22475.1 N 0.905
Pm013209 Prunus mume Pm013209 I 0.941
POPTR_0001s06330 Populus trichocarpa POPTR_0001s06330 N 0.877
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I 0.945
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.836
PRUPE_ppa010427mg Prunus persica PRUPE_ppa010427mg I 0.818
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I 0.941
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I 0.935
SapurV1A.0504s0110 Salix purpurea SapurV1A.0504s0110 N 0.877
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.854
SapurV1A.2810s0010 Salix purpurea SapurV1A.2810s0010 N 0.877
Solyc03g122030.1 Solanum lycopersicum Solyc03g122030.1 I 0.957
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I 0.873
TCM_029209 Theobroma cacao TCM_029209 I 0.927
TCM_042467 Theobroma cacao TCM_042467 N 0.892
Thhalv10011582m.g Eutrema salsugineum Thhalv10011582m.g I 0.830
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I 0.892
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.909
VIT_09s0002g00720 Vitis vinifera VIT_09s0002g00720 N 0.906