Thhalv10002352m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10002352m.g T259098_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10002352m MADS box 10 55

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

45 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30199.m000879 Ricinus communis 30199.m000879 I 0.705
Bo5g145000 Brassica oleracea Bo5g145000 I 0.705
Bo9g078450 Brassica oleracea Bo9g078450 I 0.727
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.727
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.705
Bra018490 Brassica rapa Bra018490 I 0.705
Bra029469 Brassica rapa Bra029469 I 0.727
Bra041022 Brassica rapa Bra041022 I 0.705
Ca_06495 Cicer arietinum Ca_06495 I 0.705
Ca_13275 Cicer arietinum Ca_13275 I 0.727
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.705
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.705
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.705
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.705
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.705
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.705
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.705
MDP0000925348 Malus domestica MDP0000925348 I 0.705
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.727
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.705
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.727
TCM_026842 Theobroma cacao TCM_026842 I 0.727
Thhalv10002346m.g Eutrema salsugineum Thhalv10002346m.g I 0.932
Thhalv10002349m.g Eutrema salsugineum Thhalv10002349m.g I 0.886
Thhalv10002350m.g Eutrema salsugineum Thhalv10002350m.g I 0.932
Thhalv10002353m.g Eutrema salsugineum Thhalv10002353m.g I 0.977
Thhalv10002789m.g Eutrema salsugineum Thhalv10002789m.g I 0.886
Thhalv10002956m.g Eutrema salsugineum Thhalv10002956m.g I 0.864
Thhalv10002996m.g Eutrema salsugineum Thhalv10002996m.g I 0.864
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.750
Thhalv10019449m.g Eutrema salsugineum Thhalv10019449m.g I 0.886
Thhalv10019451m.g Eutrema salsugineum Thhalv10019451m.g I 0.932
Thhalv10019516m.g Eutrema salsugineum Thhalv10019516m.g I 0.851
Thhalv10019579m.g Eutrema salsugineum Thhalv10019579m.g I 0.932
Thhalv10019667m.g Eutrema salsugineum Thhalv10019667m.g N 0.795
Thhalv10019681m.g Eutrema salsugineum Thhalv10019681m.g I 0.886
Thhalv10019731m.g Eutrema salsugineum Thhalv10019731m.g I 0.886
Thhalv10019751m.g Eutrema salsugineum Thhalv10019751m.g I 0.932
Thhalv10019758m.g Eutrema salsugineum Thhalv10019758m.g N 0.841
Thhalv10019810m.g Eutrema salsugineum Thhalv10019810m.g I 0.886
Thhalv10019833m.g Eutrema salsugineum Thhalv10019833m.g I 0.886
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.750
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.750
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.750
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.750