Thhalv10019554m.g (Eutrema salsugineum)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Thhalv10019554m.g T321270_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RKD2
M07249_2.00 		Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN
NDRGAAGHYGAANVGWCDN		 Dap-seq
OMalley et al.(2016)
RKD2_col_a 		0.898 0.898
RKD2
M07250_2.00 		Arabidopsis thaliana
GWCBBTTCRDMTTCC
GGAAKHYGAAVVGWC		 Dap-seq
OMalley et al.(2016)
RKD2_colamp_a 		0.898 0.898
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10019554m RWP-RK 130 178

Links

Other RWP-RK family TFs
Other Eutrema salsugineum TFs

92 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30138.m004071 Ricinus communis 30138.m004071 I 0.857
AMTR_s00057p00091350 Amborella trichopoda AMTR_s00057p00091350 I 0.730
RKD1 Arabidopsis thaliana AT1G18790 I 0.857
RKD2 Arabidopsis thaliana AT1G74480 D 0.898
RKD3 Arabidopsis thaliana AT5G66990 N 0.714
BGIOSGA005630 Oryza indica BGIOSGA005630 I 0.714
BGIOSGA022580 Oryza indica BGIOSGA022580 I 0.776
Bo7g064180 Brassica oleracea Bo7g064180 I 0.755
Bo8g068090 Brassica oleracea Bo8g068090 I 0.735
Bostr.0568s0123 Boechera stricta Bostr.0568s0123 N 0.714
Bostr.3288s0094 Boechera stricta Bostr.3288s0094 I 0.959
Bra008153 Brassica rapa Bra008153 I 0.898
Bra012122 Brassica rapa Bra012122 I 0.755
Bra015907 Brassica rapa Bra015907 I 0.959
Bra016542 Brassica rapa Bra016542 I 0.735
Cagra.0402s0077 Capsella grandiflora Cagra.0402s0077 I 0.980
Cagra.4153s0001 Capsella grandiflora Cagra.4153s0001 I 0.837
Carubv10011133m.g Capsella rubella Carubv10011133m.g I 0.837
Carubv10021541m.g Capsella rubella Carubv10021541m.g I 0.980
cassava35166.m1 Manihot esculenta cassava35166.m1 I 0.898
Ca_13151 Cicer arietinum Ca_13151 I 0.837
Ca_27191 Cicer arietinum Ca_27191 I 0.755
chr4.CM0087.990.nc Lotus japonicus chr4.CM0087.990.nc I 0.837
Cla019404 Citrullus lanatus Cla019404 I 0.857
Cucsa.197700 Cucumis sativus Cucsa.197700 I 0.776
evm.TU.supercontig_423.7 Carica papaya evm.TU.supercontig_423.7 I 0.857
F775_00225 Aegilops tauschii F775_00225 I 0.735
F775_07483 Aegilops tauschii F775_07483 I 0.735
fgenesh1_pg.C_scaffold_2000886 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000886 I 0.735
fgenesh1_pg.C_scaffold_2001738 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001738 I 0.959
fgenesh1_pg.C_scaffold_8002648 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002648 I 0.735
fgenesh2_kg.1__2057__AT1G18790.1 Arabidopsis lyrata fgenesh2_kg.1__2057__AT1G18790.1 I 0.857
gene26015-v1.0-hybrid Fragaria vesca gene26015-v1.0-hybrid I 0.857
Genemark1.7281_g Coccomyxa subellipsoidea C169 Genemark1.7281_g I 0.731
GLYMA04G33516 Glycine max GLYMA04G33516 I 0.776
GLYMA05G01030 Glycine max GLYMA05G01030 I 0.837
GLYMA06G20881 Glycine max GLYMA06G20881 I 0.776
GLYMA17G10866 Glycine max GLYMA17G10866 I 0.816
Gorai.006G266900 Gossypium raimondii Gorai.006G266900 I 0.816
Gorai.008G193400 Gossypium raimondii Gorai.008G193400 I 0.816
GRMZM2G392306 Zea mays GRMZM2G392306 I 0.776
LjSGA_030914.1 Lotus japonicus LjSGA_030914.1 N 0.700
LPERR06G07570 Leersia perrieri LPERR06G07570 I 0.755
Lus10019100.g Linum usitatissimum Lus10019100.g I 0.755
Lus10034456.g Linum usitatissimum Lus10034456.g I 0.776
Lus10035008.g Linum usitatissimum Lus10035008.g I 0.714
MDP0000261199 Malus domestica MDP0000261199 I 0.857
MDP0000266172 Malus domestica MDP0000266172 I 0.857
mg020279m Mimulus guttatus mg020279m I 0.878
mgf022310m Mimulus guttatus mgf022310m I 0.796
MLOC_12609 Hordeum vulgare MLOC_12609 I 0.757
MLOC_59560 Hordeum vulgare MLOC_59560 I 0.776
MTR_0140s0010 Medicago truncatula MTR_0140s0010 I 0.850
MTR_3g435550 Medicago truncatula MTR_3g435550 I 0.796
OB02G39310 Oryza brachyantha OB02G39310 I 0.735
OB06G17750 Oryza brachyantha OB06G17750 I 0.755
OBART02G32320 Oryza barthii OBART02G32320 I 0.714
OGLUM02G32960 Oryza glumaepatula OGLUM02G32960 I 0.714
OMERI02G30990 Oryza meridionalis OMERI02G30990 I 0.714
OMERI06G09770 Oryza meridionalis OMERI06G09770 I 0.776
ONIVA06G04700 Oryza nivara ONIVA06G04700 I 0.714
ONIVA06G09450 Oryza nivara ONIVA06G09450 I 0.776
OPUNC02G29870 Oryza punctata OPUNC02G29870 I 0.714
OPUNC06G07940 Oryza punctata OPUNC06G07940 I 0.776
orange1.1g036926m.g Citrus sinensis orange1.1g036926m.g I 0.889
ORGLA02G0278600 Oryza glaberrima ORGLA02G0278600 I 0.714
ORGLA06G0077700 Oryza glaberrima ORGLA06G0077700 I 0.776
ORUFI02G34010 Oryza rufipogon ORUFI02G34010 I 0.714
ORUFI06G08510 Oryza rufipogon ORUFI06G08510 I 0.776
OS06G0228950 Oryza sativa OS06G0228950 I 0.776
Pavir.Aa00708 Panicum virgatum Pavir.Aa00708 I 0.714
Pavir.Ab02992 Panicum virgatum Pavir.Ab02992 I 0.735
Pavir.Da01160 Panicum virgatum Pavir.Da01160 I 0.776
Pavir.J13146 Panicum virgatum Pavir.J13146 I 0.776
PDK_20s1383532g001 Phoenix dactylifera PDK_20s1383532g001 I 0.755
Pm024905 Prunus mume Pm024905 I 0.878
PRUPE_ppa023107mg Prunus persica PRUPE_ppa023107mg I 0.878
Sb10g008120 Sorghum bicolor Sb10g008120 I 0.755
scaffold_103100001.1 Arabidopsis lyrata scaffold_103100001.1 I 0.735
SELMODRAFT_73109 Selaginella moellendorffii SELMODRAFT_73109 N 0.714
SELMODRAFT_73110 Selaginella moellendorffii SELMODRAFT_73110 N 0.714
Si008273m.g Setaria italica Si008273m.g I 0.755
Si019159m.g Setaria italica Si019159m.g N 0.717
Si020172m.g Setaria italica Si020172m.g I 0.730
Solyc03g116010.1 Solanum lycopersicum Solyc03g116010.1 I 0.796
TCM_014009 Theobroma cacao TCM_014009 I 0.837
Thhalv10005560m.g Eutrema salsugineum Thhalv10005560m.g N 0.714
Traes_6BL_301505440 Triticum aestivum Traes_6BL_301505440 I 0.735
Traes_6DL_8ECBBC867 Triticum aestivum Traes_6DL_8ECBBC867 I 0.735
Traes_7DS_405F08A53 Triticum aestivum Traes_7DS_405F08A53 I 0.735
TRIUR3_19503 Triticum urartu TRIUR3_19503 I 0.776
VIT_17s0000g06250 Vitis vinifera VIT_17s0000g06250 I 0.857