Bo1g037180 (Brassica oleracea)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Bo1g037180 T326649_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.524 0.751
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.524 0.751
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo1g037180.1 Sox 140 208
Bo1g037180.1 Sox 257 323
Bo1g037180.1 Sox 382 450

Links

Other Sox family TFs
Other Brassica oleracea TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30190.m010807 Ricinus communis 30190.m010807 I 0.468
HMGB13 Arabidopsis thaliana AT4G11080 D 0.524
HMGB6 Arabidopsis thaliana AT4G23800 I 0.652
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.529
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.661
Bra013731 Brassica rapa Bra013731 I 0.739
Bra035256 Brassica rapa Bra035256 I 0.473
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.432
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.661
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.537
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.546
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.661
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.447
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.454
Cla011101 Citrullus lanatus Cla011101 I 0.455
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.463
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.458
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.438
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.532
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.490
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.430
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.445
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.471
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.464
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.489
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.490
MDP0000268093 Malus domestica MDP0000268093 I 0.417
mgf015439m Mimulus guttatus mgf015439m I 0.438
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.422
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.472
Pm024077 Prunus mume Pm024077 I 0.471
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.513
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.488
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.471
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.501
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.474
TCM_016416 Theobroma cacao TCM_016416 I 0.517
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.653
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.529
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.480