GSMUA_Achr5G06660_001 (Musa acuminata)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 GSMUA_Achr5G06660_001 T343971_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.953 0.631
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.952 0.631
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.948 0.541
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.948 0.541
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.948 0.541
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.934 0.550
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.891 0.432
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.890 0.432
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.888 0.423
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.874 0.405
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.867 0.450
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.867 0.450
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.845 0.378
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.837 0.378
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr5P06660_001 TCP 164 354

Links

Other TCP family TFs
Other Musa acuminata TFs

419 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30073.m002204 Ricinus communis 30073.m002204 N 0.000
AMTR_s00077p00190160 Amborella trichopoda AMTR_s00077p00190160 N 0.000
Aquca_004_00566 Aquilegia coerulea Aquca_004_00566 N 0.000
SCR Arabidopsis thaliana AT3G54220 N 0.000
BGIOSGA034703 Oryza indica BGIOSGA034703 N 0.000
BGIOSGA036912 Oryza indica BGIOSGA036912 N 0.000
Bo8g083500 Brassica oleracea Bo8g083500 N 0.000
Bostr.0697s0034 Boechera stricta Bostr.0697s0034 N 0.000
Bra007056 Brassica rapa Bra007056 N 0.000
Cagra.0562s0013 Capsella grandiflora Cagra.0562s0013 N 0.000
Carubv10016802m.g Capsella rubella Carubv10016802m.g N 0.000
cassava25218.valid.m1 Manihot esculenta cassava25218.valid.m1 N 0.000
cassava36326.valid.m1 Manihot esculenta cassava36326.valid.m1 N 0.000
Ca_09530 Cicer arietinum Ca_09530 N 0.000
chr1.CM1255.400.nc Lotus japonicus chr1.CM1255.400.nc N 0.000
Cla012346 Citrullus lanatus Cla012346 N 0.000
Cucsa.002880 Cucumis sativus Cucsa.002880 N 0.000
Eucgr.K01320 Eucalyptus grandis Eucgr.K01320 N 0.000
evm.TU.supercontig_1018.1 Carica papaya evm.TU.supercontig_1018.1 N 0.000
SCR Arabidopsis lyrata fgenesh2_kg.5__1811__AT3G54220.1 N 0.000
gene13644-v1.0-hybrid Fragaria vesca gene13644-v1.0-hybrid N 0.000
GLYMA09G40620 Glycine max GLYMA09G40620 N 0.000
GLYMA18G45220 Glycine max GLYMA18G45220 N 0.000
Gorai.005G001300 Gossypium raimondii Gorai.005G001300 N 0.000
Gorai.006G236200 Gossypium raimondii Gorai.006G236200 N 0.000
GRMZM2G015080 Zea mays GRMZM2G015080 N 0.000
GRMZM2G131516 Zea mays GRMZM2G131516 N 0.000
GSMUA_Achr8G09400_001 Musa acuminata GSMUA_Achr8G09400_001 N 0.000
LPERR11G01220 Leersia perrieri LPERR11G01220 N 0.000
LPERR12G01340 Leersia perrieri LPERR12G01340 N 0.000
Lus10016496.g Linum usitatissimum Lus10016496.g N 0.000
Lus10040734.g Linum usitatissimum Lus10040734.g N 0.000
MDP0000397638 Malus domestica MDP0000397638 N 0.000
mgf012242m Mimulus guttatus mgf012242m N 0.000
MLOC_64716 Hordeum vulgare MLOC_64716 N 0.000
MTR_7g074650 Medicago truncatula MTR_7g074650 N 0.000
OBART11G01460 Oryza barthii OBART11G01460 N 0.000
OBART12G01190 Oryza barthii OBART12G01190 N 0.000
OGLUM11G01180 Oryza glumaepatula OGLUM11G01180 N 0.000
OLONG_010321 Oryza longistaminata OLONG_010321 N 0.000
orange1.1g014896m.g Citrus sinensis orange1.1g014896m.g N 0.000
ORUFI11G01380 Oryza rufipogon ORUFI11G01380 N 0.000
ORUFI12G01460 Oryza rufipogon ORUFI12G01460 N 0.000
SCR1 Oryza sativa OS11G0124300 N 0.000
SCR2 Oryza sativa OS12G0122000 N 0.000
Pavir.J08573 Panicum virgatum Pavir.J08573 N 0.000
PGSC0003DMG400016833 Solanum tuberosum PGSC0003DMG400016833 N 0.000
Pm002956 Prunus mume Pm002956 N 0.000
POPTR_0006s11500 Populus trichocarpa POPTR_0006s11500 N 0.000
POPTR_0016s15060 Populus trichocarpa POPTR_0016s15060 N 0.000
PRUPE_ppa001546mg Prunus persica PRUPE_ppa001546mg N 0.000
SapurV1A.0208s0090 Salix purpurea SapurV1A.0208s0090 N 0.000
SapurV1A.1165s0100 Salix purpurea SapurV1A.1165s0100 N 0.000
Sb05g001500 Sorghum bicolor Sb05g001500 N 0.000
SELMODRAFT_432115 Selaginella moellendorffii SELMODRAFT_432115 N 0.000
Solyc10g074680.1 Solanum lycopersicum Solyc10g074680.1 N 0.000
TCM_017746 Theobroma cacao TCM_017746 N 0.000
Thhalv10010179m.g Eutrema salsugineum Thhalv10010179m.g N 0.000
Traes_4BS_A05D3DC53 Triticum aestivum Traes_4BS_A05D3DC53 N 0.000
Traes_4DS_2CE9E3235 Triticum aestivum Traes_4DS_2CE9E3235 N 0.000
Traes_5BL_C02570726 Triticum aestivum Traes_5BL_C02570726 N 0.000
SCR Vitis vinifera VIT_08s0056g00050 N 0.000