Cla012346 (Citrullus lanatus)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03514 (GRAS) IPR005202 Cla012346 T201921_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cla012346 GRAS 476 836

Links

Other GRAS family TFs
Other Citrullus lanatus TFs

81 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.002880 Cucumis sativus Cucsa.002880 N 0.997
SCR Vitis vinifera VIT_08s0056g00050 N 0.916
30073.m002204 Ricinus communis 30073.m002204 N 0.914
cassava25218.valid.m1 Manihot esculenta cassava25218.valid.m1 N 0.911
gene13644-v1.0-hybrid Fragaria vesca gene13644-v1.0-hybrid N 0.911
PRUPE_ppa001546mg Prunus persica PRUPE_ppa001546mg N 0.909
POPTR_0016s15060 Populus trichocarpa POPTR_0016s15060 N 0.908
Pm002956 Prunus mume Pm002956 N 0.906
Ciclev10011085m.g Citrus clementina Ciclev10011085m.g N 0.905
orange1.1g014896m.g Citrus sinensis orange1.1g014896m.g N 0.905
SapurV1A.0208s0090 Salix purpurea SapurV1A.0208s0090 N 0.905
PK22310.1 Cannabis sativa PK22310.1 N 0.905
cassava36326.valid.m1 Manihot esculenta cassava36326.valid.m1 N 0.903
evm.TU.supercontig_1018.1 Carica papaya evm.TU.supercontig_1018.1 N 0.900
PK17372.1 Cannabis sativa PK17372.1 N 0.899
MDP0000397638 Malus domestica MDP0000397638 N 0.895
GLYMA09G40620 Glycine max GLYMA09G40620 N 0.891
MTR_7g074650 Medicago truncatula MTR_7g074650 N 0.891
POPTR_0006s11500 Populus trichocarpa POPTR_0006s11500 N 0.891
TCM_017746 Theobroma cacao TCM_017746 N 0.889
chr1.CM1255.400.nc Lotus japonicus chr1.CM1255.400.nc N 0.884
Solyc10g074680.1 Solanum lycopersicum Solyc10g074680.1 N 0.881
Eucgr.K01320 Eucalyptus grandis Eucgr.K01320 N 0.880
GLYMA18G45220 Glycine max GLYMA18G45220 N 0.878
LPERR11G01220 Leersia perrieri LPERR11G01220 N 0.875
PGSC0003DMG400016833 Solanum tuberosum PGSC0003DMG400016833 N 0.875
SapurV1A.1165s0100 Salix purpurea SapurV1A.1165s0100 N 0.875
Thhalv10010179m.g Eutrema salsugineum Thhalv10010179m.g N 0.875
SCR Arabidopsis thaliana AT3G54220 N 0.873
Bo8g083500 Brassica oleracea Bo8g083500 N 0.873
SCR Arabidopsis lyrata fgenesh2_kg.5__1811__AT3G54220.1 N 0.873
Ca_09530 Cicer arietinum Ca_09530 N 0.873
Bostr.0697s0034 Boechera stricta Bostr.0697s0034 N 0.873
Cagra.0562s0013 Capsella grandiflora Cagra.0562s0013 N 0.873
Carubv10016802m.g Capsella rubella Carubv10016802m.g N 0.873
mgf012242m Mimulus guttatus mgf012242m N 0.872
Gorai.006G236200 Gossypium raimondii Gorai.006G236200 N 0.867
Bra007056 Brassica rapa Bra007056 N 0.863
Aquca_004_00566 Aquilegia coerulea Aquca_004_00566 N 0.861
Gorai.005G001300 Gossypium raimondii Gorai.005G001300 N 0.852
GRMZM2G131516 Zea mays GRMZM2G131516 N 0.826
GSMUA_Achr8G09400_001 Musa acuminata GSMUA_Achr8G09400_001 N 0.824
Lus10016496.g Linum usitatissimum Lus10016496.g N 0.817
Pavir.J19041 Panicum virgatum Pavir.J19041 N 0.817
OBART12G01190 Oryza barthii OBART12G01190 N 0.811
OGLUM11G01180 Oryza glumaepatula OGLUM11G01180 N 0.811
OLONG_010321 Oryza longistaminata OLONG_010321 N 0.811
BGIOSGA034703 Oryza indica BGIOSGA034703 N 0.809
BGIOSGA036912 Oryza indica BGIOSGA036912 N 0.809
ORUFI12G01460 Oryza rufipogon ORUFI12G01460 N 0.809
SCR1 Oryza sativa OS11G0124300 N 0.809
SCR2 Oryza sativa OS12G0122000 N 0.809
AMTR_s00077p00190160 Amborella trichopoda AMTR_s00077p00190160 N 0.807
Lus10040734.g Linum usitatissimum Lus10040734.g N 0.807
Sb05g001500 Sorghum bicolor Sb05g001500 N 0.806
TRIUR3_28106 Triticum urartu TRIUR3_28106 N 0.803
LPERR12G01340 Leersia perrieri LPERR12G01340 N 0.802
OGLUM12G01020 Oryza glumaepatula OGLUM12G01020 N 0.801
ONIVA11G01600 Oryza nivara ONIVA11G01600 N 0.796
OPUNC11G01240 Oryza punctata OPUNC11G01240 N 0.796
ORGLA12G0010300 Oryza glaberrima ORGLA12G0010300 N 0.793
OBART11G01460 Oryza barthii OBART11G01460 N 0.792
Traes_4DS_2CE9E3235 Triticum aestivum Traes_4DS_2CE9E3235 N 0.792
Traes_5DL_3EC609F62 Triticum aestivum Traes_5DL_3EC609F62 N 0.792
Pavir.J21588 Panicum virgatum Pavir.J21588 N 0.792
ORGLA11G0013300 Oryza glaberrima ORGLA11G0013300 N 0.791
Traes_4BS_A05D3DC53 Triticum aestivum Traes_4BS_A05D3DC53 N 0.789
Traes_5BL_C02570726 Triticum aestivum Traes_5BL_C02570726 N 0.789
Pavir.J23622 Panicum virgatum Pavir.J23622 N 0.783
LPERR11G01210 Leersia perrieri LPERR11G01210 N 0.781
ORUFI11G01380 Oryza rufipogon ORUFI11G01380 N 0.781
BRADI4G44090 Brachypodium distachyon BRADI4G44090 N 0.778
MLOC_64716 Hordeum vulgare MLOC_64716 N 0.778
GRMZM2G015080 Zea mays GRMZM2G015080 N 0.765
Pavir.J08573 Panicum virgatum Pavir.J08573 N 0.765
F775_14336 Aegilops tauschii F775_14336 N 0.748
Pavir.Ha01915 Panicum virgatum Pavir.Ha01915 N 0.736
SELMODRAFT_432115 Selaginella moellendorffii SELMODRAFT_432115 N 0.727
Traes_2AS_455BD2CA1 Triticum aestivum Traes_2AS_455BD2CA1 N 0.727
OB07G24850 Oryza brachyantha OB07G24850 N 0.719
OS07G0567700 Oryza sativa OS07G0567700 N 0.719