CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GLYMA18G45220
(
Glycine max
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
GLYMA18G45220
T200251_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GLYMA18G45220.2
GRAS
475
831
LLTLLLQCAEAVSSENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPHTHQSHKVASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGAPYVRLTGLGTSMEALEATGKRLSDFANKLGLPFEFFPVAEKVGNLDPERLNVCKTEAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSNTGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRTGEPKFHNWREKLQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWR
GLYMA18G45220.3
GRAS
297
653
LLTLLLQCAEAVSSENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPHTHQSHKVASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGAPYVRLTGLGTSMEALEATGKRLSDFANKLGLPFEFFPVAEKVGNLDPERLNVCKTEAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSNTGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRTGEPKFHNWREKLQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWR
Links
Other
GRAS
family TFs
Other
Glycine max
TFs
84 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GLYMA09G40620
Glycine max
GLYMA09G40620
N
0.992
chr1.CM1255.400.nc
Lotus japonicus
chr1.CM1255.400.nc
N
0.972
Ca_09530
Cicer arietinum
Ca_09530
N
0.944
MTR_7g074650
Medicago truncatula
MTR_7g074650
N
0.941
PK22310.1
Cannabis sativa
PK22310.1
N
0.911
cassava25218.valid.m1
Manihot esculenta
cassava25218.valid.m1
N
0.908
evm.TU.supercontig_1018.1
Carica papaya
evm.TU.supercontig_1018.1
N
0.906
SCR
Vitis vinifera
VIT_08s0056g00050
N
0.905
POPTR_0016s15060
Populus trichocarpa
POPTR_0016s15060
N
0.903
SapurV1A.0208s0090
Salix purpurea
SapurV1A.0208s0090
N
0.903
cassava36326.valid.m1
Manihot esculenta
cassava36326.valid.m1
N
0.900
Ciclev10011085m.g
Citrus clementina
Ciclev10011085m.g
N
0.900
orange1.1g014896m.g
Citrus sinensis
orange1.1g014896m.g
N
0.900
30073.m002204
Ricinus communis
30073.m002204
N
0.897
POPTR_0006s11500
Populus trichocarpa
POPTR_0006s11500
N
0.894
TCM_017746
Theobroma cacao
TCM_017746
N
0.891
Eucgr.K01320
Eucalyptus grandis
Eucgr.K01320
N
0.888
PRUPE_ppa001546mg
Prunus persica
PRUPE_ppa001546mg
N
0.886
Pm002956
Prunus mume
Pm002956
N
0.884
gene13644-v1.0-hybrid
Fragaria vesca
gene13644-v1.0-hybrid
N
0.884
Gorai.006G236200
Gossypium raimondii
Gorai.006G236200
N
0.881
Cla012346
Citrullus lanatus
Cla012346
N
0.878
MDP0000397638
Malus domestica
MDP0000397638
N
0.878
LPERR11G01220
Leersia perrieri
LPERR11G01220
N
0.875
Cucsa.002880
Cucumis sativus
Cucsa.002880
N
0.875
SapurV1A.1165s0100
Salix purpurea
SapurV1A.1165s0100
N
0.875
SCR
Arabidopsis thaliana
AT3G54220
N
0.866
SCR
Arabidopsis lyrata
fgenesh2_kg.5__1811__AT3G54220.1
N
0.866
Bostr.0697s0034
Boechera stricta
Bostr.0697s0034
N
0.866
Cagra.0562s0013
Capsella grandiflora
Cagra.0562s0013
N
0.866
Carubv10016802m.g
Capsella rubella
Carubv10016802m.g
N
0.866
Gorai.005G001300
Gossypium raimondii
Gorai.005G001300
N
0.866
Solyc10g074680.1
Solanum lycopersicum
Solyc10g074680.1
N
0.864
mgf012242m
Mimulus guttatus
mgf012242m
N
0.863
Thhalv10010179m.g
Eutrema salsugineum
Thhalv10010179m.g
N
0.862
Aquca_004_00566
Aquilegia coerulea
Aquca_004_00566
N
0.861
Bo8g083500
Brassica oleracea
Bo8g083500
N
0.859
PK17372.1
Cannabis sativa
PK17372.1
N
0.859
PGSC0003DMG400016833
Solanum tuberosum
PGSC0003DMG400016833
N
0.856
Bra007056
Brassica rapa
Bra007056
N
0.853
GRMZM2G131516
Zea mays
GRMZM2G131516
N
0.833
GSMUA_Achr8G09400_001
Musa acuminata
GSMUA_Achr8G09400_001
N
0.826
TRIUR3_28106
Triticum urartu
TRIUR3_28106
N
0.826
Pavir.J19041
Panicum virgatum
Pavir.J19041
N
0.824
OGLUM12G01020
Oryza glumaepatula
OGLUM12G01020
N
0.820
ONIVA11G01600
Oryza nivara
ONIVA11G01600
N
0.820
OPUNC11G01240
Oryza punctata
OPUNC11G01240
N
0.820
OBART12G01190
Oryza barthii
OBART12G01190
N
0.818
OGLUM11G01180
Oryza glumaepatula
OGLUM11G01180
N
0.818
OLONG_010321
Oryza longistaminata
OLONG_010321
N
0.818
Sb05g001500
Sorghum bicolor
Sb05g001500
N
0.817
LPERR12G01340
Leersia perrieri
LPERR12G01340
N
0.808
Pavir.J21588
Panicum virgatum
Pavir.J21588
N
0.805
BGIOSGA034703
Oryza indica
BGIOSGA034703
N
0.803
BGIOSGA036912
Oryza indica
BGIOSGA036912
N
0.803
OB11G11140
Oryza brachyantha
OB11G11140
N
0.803
OB12G11340
Oryza brachyantha
OB12G11340
N
0.803
ORUFI12G01460
Oryza rufipogon
ORUFI12G01460
N
0.803
SCR1
Oryza sativa
OS11G0124300
N
0.803
SCR2
Oryza sativa
OS12G0122000
N
0.803
Traes_4DS_2CE9E3235
Triticum aestivum
Traes_4DS_2CE9E3235
N
0.801
Traes_5DL_3EC609F62
Triticum aestivum
Traes_5DL_3EC609F62
N
0.800
BRADI4G44090
Brachypodium distachyon
BRADI4G44090
N
0.798
Traes_4BS_A05D3DC53
Triticum aestivum
Traes_4BS_A05D3DC53
N
0.798
Traes_5BL_C02570726
Triticum aestivum
Traes_5BL_C02570726
N
0.792
Lus10016496.g
Linum usitatissimum
Lus10016496.g
N
0.792
AMTR_s00077p00190160
Amborella trichopoda
AMTR_s00077p00190160
N
0.790
OBART11G01460
Oryza barthii
OBART11G01460
N
0.787
F775_14336
Aegilops tauschii
F775_14336
N
0.785
Lus10040734.g
Linum usitatissimum
Lus10040734.g
N
0.785
ORGLA12G0010300
Oryza glaberrima
ORGLA12G0010300
N
0.784
ORUFI11G01380
Oryza rufipogon
ORUFI11G01380
N
0.784
GRMZM2G015080
Zea mays
GRMZM2G015080
N
0.782
ORGLA11G0013300
Oryza glaberrima
ORGLA11G0013300
N
0.782
MLOC_64716
Hordeum vulgare
MLOC_64716
N
0.781
LPERR11G01210
Leersia perrieri
LPERR11G01210
N
0.777
Pavir.J08573
Panicum virgatum
Pavir.J08573
N
0.776
Pavir.J23622
Panicum virgatum
Pavir.J23622
N
0.758
Pavir.Ha01915
Panicum virgatum
Pavir.Ha01915
N
0.749
Traes_2AS_455BD2CA1
Triticum aestivum
Traes_2AS_455BD2CA1
N
0.727
OB07G24850
Oryza brachyantha
OB07G24850
N
0.719
OS07G0567700
Oryza sativa
OS07G0567700
N
0.719
SELMODRAFT_432115
Selaginella moellendorffii
SELMODRAFT_432115
N
0.713