GLYMA20G28740 (Glycine max)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03638 (TCR) IPR005172 GLYMA20G28740 T345412_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCX2
M07300_2.00 		Arabidopsis thaliana
WWTYVAAATTYRAAW
WTTYRAATTTBRAWW		 Dap-seq
OMalley et al.(2016)
TCX2_col_a 		0.672 0.908
TCX2
M07301_2.00 		Arabidopsis thaliana
TTYVAAATTYRAAW
WTTYRAATTTBRAA		 Dap-seq
OMalley et al.(2016)
TCX2_colamp_a 		0.672 0.908
PK22848.1
M02532_2.00 		Cannabis sativa
NNNYNAAATTTNN
NNAAATTTNRNNN		 PBM
Weirauch et al.(2014)
pTH9724 		0.672 0.895
TCX3
M01087_2.00 		Arabidopsis thaliana
NNDTTYAAAH
DTTTRAAHNN		 PBM
Sullivan et al.(2014)
pTH7218 		0.672 0.882
TCX3
M02522_2.00 		Arabidopsis thaliana
WTTYAAAH
DTTTRAAW		 PBM
Weirauch et al.(2014)
pTH7421 		0.672 0.882
TCX3
M07297_2.00 		Arabidopsis thaliana
DWTTYRAAWTTBAAW
WTTVAAATTYRAAWH		 Dap-seq
OMalley et al.(2016)
SOL1_colamp_a 		0.672 0.882
TCX3
M07298_2.00 		Arabidopsis thaliana
WTWWAAAATTYAAAW
WTTTRAATTTTWWAW		 Dap-seq
OMalley et al.(2016)
SOL1_col 		0.672 0.882
TSO1
M07299_2.00 		Arabidopsis thaliana
WWWTWDAAATTYAAA
TTTRAATTTHWAWWW		 Dap-seq
OMalley et al.(2016)
TSO1_col_a 		0.672 0.882
BRADI1G55710
M02525_2.00 		Brachypodium distachyon
NVTBYRVABN
NVTBYRVABN		 PBM
Weirauch et al.(2014)
pTH9241 		0.672 0.868
TCX4
M02521_2.00 		Arabidopsis thaliana
DWTTYRAAWH
DWTTYRAAWH		 PBM
Weirauch et al.(2014)
pTH7573 		0.672 0.737
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00 		Ostreococcus tauri
NNNNNRHNN
NNDYNNNNN		 PBM
Weirauch et al.(2014)
pTH9457 		0.672 0.645
AT5G25790
M01319_2.00 		Arabidopsis thaliana
NHYRAAHN
NDTTYRDN		 PBM
Lambert et al.(2019)
pTH11533 		0.672 0.632
AT2G20110
M02520_2.00 		Arabidopsis thaliana
DTTTAAAH
DTTTAAAH		 PBM
Weirauch et al.(2014)
pTH7914 		0.672 0.605
TCX5
M02523_2.00 		Arabidopsis thaliana
NRTTCAAAYN
NRTTTGAAYN		 PBM
Weirauch et al.(2014)
pTH8164 		0.672 0.605
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00 		Chlorella vulgaris
NNNNDYRAAH
DTTYRHNNNN		 PBM
Weirauch et al.(2014)
pTH9252 		0.672 0.605
AT2G20110
M07295_2.00 		Arabidopsis thaliana
WWHWAADATTYAAAW
WTTTRAATHTTWDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_col_a 		0.672 0.605
AT2G20110
M07296_2.00 		Arabidopsis thaliana
WWHNAAATTYAAAHN
NDTTTRAATTTNDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a 		0.672 0.605
lin54
M02526_2.00 		Danio rerio
NHTYRAAH
DTTYRADN		 PBM
Weirauch et al.(2014)
pTH8399 		0.672 0.579
LIN54
M02527_2.00 		Gallus gallus
NRTTYAAAH
DTTTRAAYN		 PBM
Weirauch et al.(2014)
pTH8566 		0.672 0.566
ENSTSYG00000005291
M02528_2.00 		Tarsius syrichta
NNWDHDHWNN
NNWDHDHWNN		 PBM
Weirauch et al.(2014)
pTH9366 		0.672 0.566
GE12548
M02529_2.00 		Drosophila yakuba
DTTYAAAY
RTTTRAAH		 PBM
Weirauch et al.(2014)
pTH9262 		0.672 0.566
GSPATT00010696001
M02530_2.00 		Paramecium tetraurelia
NNBRAAHN
NDTTYVNN		 PBM
Weirauch et al.(2014)
pTH8720 		0.672 0.566
SPU_025306
M02531_2.00 		Strongylocentrotus purpuratus
NNNNWYRAAH
DTTYRWNNNN		 PBM
Weirauch et al.(2014)
pTH9286 		0.672 0.566
XP_002124866.1
M01321_2.00 		Ciona intestinalis
NDTTYRAAN
NTTYRAAHN		 PBM
Lambert et al.(2019)
pTH9835 		0.672 0.566
gw1.20.00.89.1
M02535_2.00 		Ostreococcus tauri
WNYWBVWRNW
WNYWBVWRNW		 PBM
Weirauch et al.(2014)
pTH9647 		0.672 0.566
PK27683.1
M01322_2.00 		Cannabis sativa
NDTTYAAAH
DTTTRAAHN		 PBM
Lambert et al.(2019)
pTH11347 		0.672 0.553
BGIBMGA008956
M02524_2.00 		Bombyx mori
AATTTAAAW
WTTTAAATT		 PBM
Weirauch et al.(2014)
pTH9238 		0.672 0.539
NEMVEDRAFT_v1g111410
M01320_2.00 		Nematostella vectensis
NNNNYRWRN
NYWYRNNNN		 PBM
Lambert et al.(2019)
pTH9771 		0.672 0.539
For this family, TFs with SR scores > 0.660 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA20G28740.3 TCR/CxC 487 524
GLYMA20G28740.3 TCR/CxC 573 610

Links

Other TCR/CxC family TFs
Other Glycine max TFs

1213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29625.m000702 Ricinus communis 29625.m000702 I
29801.m003176 Ricinus communis 29801.m003176 I
30055.m001548 Ricinus communis 30055.m001548 I
30170.m013868 Ricinus communis 30170.m013868 I
AMTR_s00114p00031980 Amborella trichopoda AMTR_s00114p00031980 I
AMTR_s00132p00065700 Amborella trichopoda AMTR_s00132p00065700 I
Aquca_072_00142 Aquilegia coerulea Aquca_072_00142 I
ABF2 Arabidopsis thaliana AT1G45249 D
ABF1 Arabidopsis thaliana AT1G49720 D
ABI5 Arabidopsis thaliana AT2G36270 D
ABF4 Arabidopsis thaliana AT3G19290 D
ABF3 Arabidopsis thaliana AT4G34000 D
BGIOSGA004837 Oryza indica BGIOSGA004837 I
BGIOSGA005551 Oryza indica BGIOSGA005551 I
BGIOSGA028831 Oryza indica BGIOSGA028831 I
BGIOSGA030899 Oryza indica BGIOSGA030899 I
Bo1g007700 Brassica oleracea Bo1g007700 I
Bo1g114840 Brassica oleracea Bo1g114840 I
Bo3g073080 Brassica oleracea Bo3g073080 I
Bo5g115300 Brassica oleracea Bo5g115300 I
Bo6g006970 Brassica oleracea Bo6g006970 I
Bo6g018480 Brassica oleracea Bo6g018480 I
Bo7g116570 Brassica oleracea Bo7g116570 I
Bostr.12302s0127 Boechera stricta Bostr.12302s0127 I
Bostr.19424s0732 Boechera stricta Bostr.19424s0732 I
Bostr.7867s1253 Boechera stricta Bostr.7867s1253 I
Bra011485 Brassica rapa Bra011485 I
Bra018800 Brassica rapa Bra018800 I
Bra037533 Brassica rapa Bra037533 I
Bra040260 Brassica rapa Bra040260 I
BRADI3G38200 Brachypodium distachyon BRADI3G38200 I
Cagra.10917s0002 Capsella grandiflora Cagra.10917s0002 I
Cagra.1305s0026 Capsella grandiflora Cagra.1305s0026 I
Cagra.2481s0016 Capsella grandiflora Cagra.2481s0016 I
Cagra.4978s0002 Capsella grandiflora Cagra.4978s0002 I
Carubv10006251m.g Capsella rubella Carubv10006251m.g I
Carubv10009177m.g Capsella rubella Carubv10009177m.g I
Carubv10013729m.g Capsella rubella Carubv10013729m.g I
cassava11518.m1 Manihot esculenta cassava11518.m1 I
cassava12275.valid.m1 Manihot esculenta cassava12275.valid.m1 I
cassava16074.m1 Manihot esculenta cassava16074.m1 I
cassava17300.m1 Manihot esculenta cassava17300.m1 I
cassava32856.m1 Manihot esculenta cassava32856.m1 I
cassava42669.valid.m1 Manihot esculenta cassava42669.valid.m1 I
cassava42743.valid.m1 Manihot esculenta cassava42743.valid.m1 I
cassava42744.valid.m1 Manihot esculenta cassava42744.valid.m1 I
cassava42745.valid.m1 Manihot esculenta cassava42745.valid.m1 I
Ca_00791 Cicer arietinum Ca_00791 I
Ca_01548 Cicer arietinum Ca_01548 I
Ca_06458 Cicer arietinum Ca_06458 I
Ciclev10001159m.g Citrus clementina Ciclev10001159m.g I
Ciclev10028435m.g Citrus clementina Ciclev10028435m.g I
Cla016272 Citrullus lanatus Cla016272 I
Cla022926 Citrullus lanatus Cla022926 I
Cucsa.219780 Cucumis sativus Cucsa.219780 I
Cucsa.241090 Cucumis sativus Cucsa.241090 I
Cucsa.385090 Cucumis sativus Cucsa.385090 I
Cucsa.396070 Cucumis sativus Cucsa.396070 I
Eucgr.F02337 Eucalyptus grandis Eucgr.F02337 I
Eucgr.G01436 Eucalyptus grandis Eucgr.G01436 I
Eucgr.I01145 Eucalyptus grandis Eucgr.I01145 I
evm.TU.supercontig_49.26 Carica papaya evm.TU.supercontig_49.26 I
evm.TU.supercontig_62.4 Carica papaya evm.TU.supercontig_62.4 I
F775_19301 Aegilops tauschii F775_19301 I
F775_32479 Aegilops tauschii F775_32479 I
ABF2 Arabidopsis lyrata fgenesh2_kg.1__3804__AT1G45249.1 I
ABF1 Arabidopsis lyrata fgenesh2_kg.1__4055__AT1G49720.1 I
ABF4 Arabidopsis lyrata fgenesh2_kg.3__2145__AT3G19290.1 I
ABF3 Arabidopsis lyrata fgenesh2_kg.7__705__AT4G34000.1 I
gene09110-v1.0-hybrid Fragaria vesca gene09110-v1.0-hybrid I
gene28250-v1.0-hybrid Fragaria vesca gene28250-v1.0-hybrid I
GLYMA04G04170 Glycine max GLYMA04G04170 I
GLYMA06G04353 Glycine max GLYMA06G04353 I
GLYMA07G33600 Glycine max GLYMA07G33600 I
GLYMA10G08370 Glycine max GLYMA10G08370 I
GLYMA13G22061 Glycine max GLYMA13G22061 I
Gorai.005G102300 Gossypium raimondii Gorai.005G102300 I
Gorai.005G237400 Gossypium raimondii Gorai.005G237400 I
Gorai.008G024700 Gossypium raimondii Gorai.008G024700 I
Gorai.009G212600 Gossypium raimondii Gorai.009G212600 I
Gorai.009G275700 Gossypium raimondii Gorai.009G275700 I
Gorai.013G044500 Gossypium raimondii Gorai.013G044500 I
GRMZM2G002075 Zea mays GRMZM2G002075 I
GRMZM2G033413 Zea mays GRMZM2G033413 I
GRMZM2G132868 Zea mays GRMZM2G132868 I
GRMZM2G157722 Zea mays GRMZM2G157722 I
GRMZM2G168079 Zea mays GRMZM2G168079 I
GRMZM2G478417 Zea mays GRMZM2G478417 I
GSMUA_Achr3G07000_001 Musa acuminata GSMUA_Achr3G07000_001 I
GSMUA_Achr3G22710_001 Musa acuminata GSMUA_Achr3G22710_001 I
GSMUA_Achr5G05690_001 Musa acuminata GSMUA_Achr5G05690_001 I
GSMUA_Achr5G24570_001 Musa acuminata GSMUA_Achr5G24570_001 I
GSMUA_Achr6G04270_001 Musa acuminata GSMUA_Achr6G04270_001 I
GSMUA_Achr6G30550_001 Musa acuminata GSMUA_Achr6G30550_001 I
GSMUA_Achr8G07740_001 Musa acuminata GSMUA_Achr8G07740_001 I
GSMUA_Achr9G08900_001 Musa acuminata GSMUA_Achr9G08900_001 N
GSMUA_Achr9G27130_001 Musa acuminata GSMUA_Achr9G27130_001 I
LjT07K13.110.nd Lotus japonicus LjT07K13.110.nd I
LPERR01G32620 Leersia perrieri LPERR01G32620 I
LPERR02G27610 Leersia perrieri LPERR02G27610 I
LPERR08G14740 Leersia perrieri LPERR08G14740 I
LPERR09G09170 Leersia perrieri LPERR09G09170 I
Lus10002399.g Linum usitatissimum Lus10002399.g I
Lus10006489.g Linum usitatissimum Lus10006489.g I
Lus10009755.g Linum usitatissimum Lus10009755.g I
Lus10014066.g Linum usitatissimum Lus10014066.g I
Lus10014194.g Linum usitatissimum Lus10014194.g I
Lus10017049.g Linum usitatissimum Lus10017049.g I
Lus10021369.g Linum usitatissimum Lus10021369.g I
Lus10022720.g Linum usitatissimum Lus10022720.g I
Lus10027897.g Linum usitatissimum Lus10027897.g I
MDP0000248567 Malus domestica MDP0000248567 I
MDP0000296303 Malus domestica MDP0000296303 I
MDP0000701734 Malus domestica MDP0000701734 I
mgf002047m Mimulus guttatus mgf002047m I
mgf002176m Mimulus guttatus mgf002176m I
mgf007524m Mimulus guttatus mgf007524m I
mgf014602m Mimulus guttatus mgf014602m I
mgf020824m Mimulus guttatus mgf020824m I
MLOC_34679 Hordeum vulgare MLOC_34679 I
MLOC_66546 Hordeum vulgare MLOC_66546 I
MTR_3g101780 Medicago truncatula MTR_3g101780 I
MTR_4g085910 Medicago truncatula MTR_4g085910 I
MTR_7g104480 Medicago truncatula MTR_7g104480 I
OB01G46760 Oryza brachyantha OB01G46760 I
OB02G40680 Oryza brachyantha OB02G40680 I
OB08G24950 Oryza brachyantha OB08G24950 I
OB09G19140 Oryza brachyantha OB09G19140 I
OBART01G37980 Oryza barthii OBART01G37980 I
OBART02G33770 Oryza barthii OBART02G33770 I
OGLUM01G42150 Oryza glumaepatula OGLUM01G42150 I
OGLUM02G34210 Oryza glumaepatula OGLUM02G34210 I
OGLUM08G18640 Oryza glumaepatula OGLUM08G18640 I
OGLUM09G13130 Oryza glumaepatula OGLUM09G13130 I
OLONG_000475 Oryza longistaminata OLONG_000475 I
OLONG_001053 Oryza longistaminata OLONG_001053 I
OLONG_014546 Oryza longistaminata OLONG_014546 I
OMERI01G34950 Oryza meridionalis OMERI01G34950 I
OMERI02G32150 Oryza meridionalis OMERI02G32150 I
OMERI09G10130 Oryza meridionalis OMERI09G10130 I
ONIVA02G33490 Oryza nivara ONIVA02G33490 I
ONIVA04G25730 Oryza nivara ONIVA04G25730 I
ONIVA08G19830 Oryza nivara ONIVA08G19830 I
OPUNC01G36800 Oryza punctata OPUNC01G36800 I
OPUNC08G15700 Oryza punctata OPUNC08G15700 I
OPUNC09G11090 Oryza punctata OPUNC09G11090 I
orange1.1g013197m.g Citrus sinensis orange1.1g013197m.g I
orange1.1g021624m.g Citrus sinensis orange1.1g021624m.g I
orange1.1g025340m.g Citrus sinensis orange1.1g025340m.g I
ORGLA01G0317900 Oryza glaberrima ORGLA01G0317900 I
ORGLA02G0292000 Oryza glaberrima ORGLA02G0292000 I
ORGLA08G0211300 Oryza glaberrima ORGLA08G0211300 I
ORGLA09G0097200 Oryza glaberrima ORGLA09G0097200 I
ORUFI01G41310 Oryza rufipogon ORUFI01G41310 I
ORUFI02G35260 Oryza rufipogon ORUFI02G35260 I
ORUFI08G19970 Oryza rufipogon ORUFI08G19970 I
OS01G0859300 Oryza sativa OS01G0859300 I
BZIP23 Oryza sativa OS02G0766700 I
OS08G0471950 Oryza sativa OS08G0471950 D
OS09G0456200 Oryza sativa OS09G0456200 I
Pavir.Ba02029 Panicum virgatum Pavir.Ba02029 I
Pavir.Da01931 Panicum virgatum Pavir.Da01931 I
Pavir.Fa00674 Panicum virgatum Pavir.Fa00674 I
Pavir.Fb01750 Panicum virgatum Pavir.Fb01750 I
Pavir.J00256 Panicum virgatum Pavir.J00256 I
Pavir.J06257 Panicum virgatum Pavir.J06257 I
Pavir.J35078 Panicum virgatum Pavir.J35078 I
Pavir.J36143 Panicum virgatum Pavir.J36143 I
PGSC0003DMG400002660 Solanum tuberosum PGSC0003DMG400002660 I
PGSC0003DMG400006211 Solanum tuberosum PGSC0003DMG400006211 I
PGSC0003DMG400008011 Solanum tuberosum PGSC0003DMG400008011 I
PGSC0003DMG400022931 Solanum tuberosum PGSC0003DMG400022931 I
PGSC0003DMG400025889 Solanum tuberosum PGSC0003DMG400025889 I
PK02169.1 Cannabis sativa PK02169.1 I
PK18009.1 Cannabis sativa PK18009.1 D
Pm001315 Prunus mume Pm001315 I
Pm005288 Prunus mume Pm005288 I
Pm021430 Prunus mume Pm021430 I
POPTR_0002s12710 Populus trichocarpa POPTR_0002s12710 I
ABI5 Populus trichocarpa POPTR_0006s08300 I
POPTR_0009s10400 Populus trichocarpa POPTR_0009s10400 I
POPTR_0009s16610 Populus trichocarpa POPTR_0009s16610 I
POPTR_0014s02810 Populus trichocarpa POPTR_0014s02810 I
PRUPE_ppa006503mg Prunus persica PRUPE_ppa006503mg I
PRUPE_ppa006752mg Prunus persica PRUPE_ppa006752mg I
SapurV1A.0167s0060 Salix purpurea SapurV1A.0167s0060 I
SapurV1A.0374s0070 Salix purpurea SapurV1A.0374s0070 I
SapurV1A.0643s0160 Salix purpurea SapurV1A.0643s0160 I
SapurV1A.0878s0160 Salix purpurea SapurV1A.0878s0160 I
SapurV1A.3185s0030 Salix purpurea SapurV1A.3185s0030 I
Sb04g034190 Sorghum bicolor Sb04g034190 I
Sb06g026410 Sorghum bicolor Sb06g026410 I
Sb07g022965 Sorghum bicolor Sb07g022965 I
Sb08g003760 Sorghum bicolor Sb08g003760 I
SELMODRAFT_443424 Selaginella moellendorffii SELMODRAFT_443424 I
Si006889m.g Setaria italica Si006889m.g I
Si013904m.g Setaria italica Si013904m.g I
Si017618m.g Setaria italica Si017618m.g I
Si030114m.g Setaria italica Si030114m.g I
Solyc01g108080.2 Solanum lycopersicum Solyc01g108080.2 I
Solyc04g078840.2 Solanum lycopersicum Solyc04g078840.2 I
Solyc09g009490.2 Solanum lycopersicum Solyc09g009490.2 I
Solyc10g050210.1 Solanum lycopersicum Solyc10g050210.1 I
Solyc11g044560.1 Solanum lycopersicum Solyc11g044560.1 I
TCM_007074 Theobroma cacao TCM_007074 I
TCM_033824 Theobroma cacao TCM_033824 I
TCM_034992 Theobroma cacao TCM_034992 I
Thhalv10011493m.g Eutrema salsugineum Thhalv10011493m.g I
Thhalv10012271m.g Eutrema salsugineum Thhalv10012271m.g I
Thhalv10020772m.g Eutrema salsugineum Thhalv10020772m.g I
Thhalv10025203m.g Eutrema salsugineum Thhalv10025203m.g I
TRAES3BF099600130CFD_g Triticum aestivum TRAES3BF099600130CFD_g I
TRAES3BF111600130CFD_g Triticum aestivum TRAES3BF111600130CFD_g I
TRAES3BF111600160CFD_g Triticum aestivum TRAES3BF111600160CFD_g I
Traes_3AL_FC5523394 Triticum aestivum Traes_3AL_FC5523394 I
Traes_3DL_E21790878 Triticum aestivum Traes_3DL_E21790878 I
TRIUR3_26781 Triticum urartu TRIUR3_26781 I
TRIUR3_31111 Triticum urartu TRIUR3_31111 I
TRIUR3_33995 Triticum urartu TRIUR3_33995 I
VIT_03s0063g00310 Vitis vinifera VIT_03s0063g00310 I
DPBF2 Vitis vinifera VIT_06s0080g00340 I
ABF2 Vitis vinifera VIT_18s0001g10450 I