Pavir.Db02235 (Panicum virgatum)
Whirly

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF08536 (Whirly) IPR013742 Pavir.Db02235 T350646_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Db02235.1.p Whirly 165 300
Pavir.Db02235.2.p Whirly 93 228
Pavir.Db02235.3.p Whirly 146 281
Pavir.Db02235.4.p Whirly 93 228
Pavir.Db02235.5.p Whirly 93 228

Links

Other Whirly family TFs
Other Panicum virgatum TFs

60 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29736.m002027 Ricinus communis 29736.m002027 N 0.743
AMTR_s00133p00020030 Amborella trichopoda AMTR_s00133p00020030 N 0.728
Aquca_002_00510 Aquilegia coerulea Aquca_002_00510 N 0.772
WHY1 Arabidopsis thaliana AT1G14410 N 0.765
WHY3 Arabidopsis thaliana AT2G02740 N 0.765
BGIOSGA022297 Oryza indica BGIOSGA022297 N 0.919
Bo7g080560 Brassica oleracea Bo7g080560 N 0.750
Bo8g066030 Brassica oleracea Bo8g066030 N 0.735
Bostr.0556s0088 Boechera stricta Bostr.0556s0088 N 0.765
Bra016702 Brassica rapa Bra016702 N 0.750
Bra024809 Brassica rapa Bra024809 N 0.757
BRADI1G51040 Brachypodium distachyon BRADI1G51040 N 0.941
Cagra.0534s0030 Capsella grandiflora Cagra.0534s0030 N 0.765
Cagra.3501s0060 Capsella grandiflora Cagra.3501s0060 N 0.743
Carubv10010024m.g Capsella rubella Carubv10010024m.g N 0.735
Carubv10017841m.g Capsella rubella Carubv10017841m.g N 0.765
cassava35817.valid.m1 Manihot esculenta cassava35817.valid.m1 N 0.750
Ca_24297 Cicer arietinum Ca_24297 N 0.713
Ciclev10032427m.g Citrus clementina Ciclev10032427m.g N 0.735
Cla022217 Citrullus lanatus Cla022217 N 0.743
Cucsa.005520 Cucumis sativus Cucsa.005520 N 0.713
Eucgr.G02539 Eucalyptus grandis Eucgr.G02539 N 0.750
evm.TU.supercontig_1007.4 Carica papaya evm.TU.supercontig_1007.4 N 0.757
ATWHY1 Arabidopsis lyrata fgenesh2_kg.1__1569__AT1G14410.1 N 0.757
ATWHY3 Arabidopsis lyrata fgenesh2_kg.5__172__AT2G02740.1 N 0.765
GLYMA08G40850 Glycine max GLYMA08G40850 N 0.765
GLYMA18G16200 Glycine max GLYMA18G16200 N 0.772
Gorai.013G077400 Gossypium raimondii Gorai.013G077400 N 0.750
GRMZM2G155662 Zea mays GRMZM2G155662 N 0.971
GSMUA_Achr10G21100_001 Musa acuminata GSMUA_Achr10G21100_001 N 0.779
LPERR06G02670 Leersia perrieri LPERR06G02670 N 0.919
Lus10036723.g Linum usitatissimum Lus10036723.g N 0.706
MDP0000268451 Malus domestica MDP0000268451 N 0.728
mgf002465m Mimulus guttatus mgf002465m N 0.765
MLOC_11586 Hordeum vulgare MLOC_11586 N 0.926
OBART06G03050 Oryza barthii OBART06G03050 N 0.912
OMERI06G03280 Oryza meridionalis OMERI06G03280 N 0.919
OMERI07G11550 Oryza meridionalis OMERI07G11550 N 0.926
ONIVA06G03980 Oryza nivara ONIVA06G03980 N 0.919
OPUNC06G02750 Oryza punctata OPUNC06G02750 N 0.919
orange1.1g024467m.g Citrus sinensis orange1.1g024467m.g N 0.735
ORGLA06G0029900 Oryza glaberrima ORGLA06G0029900 N 0.912
ORUFI06G03010 Oryza rufipogon ORUFI06G03010 N 0.919
OS06G0145800 Oryza sativa OS06G0145800 N 0.919
Pavir.Da02402 Panicum virgatum Pavir.Da02402 N 0.985
PGSC0003DMG400017627 Solanum tuberosum PGSC0003DMG400017627 N 0.728
PK22670.1 Cannabis sativa PK22670.1 N 0.728
Pm006558 Prunus mume Pm006558 N 0.713
POPTR_0008s14840 Populus trichocarpa POPTR_0008s14840 N 0.721
POPTR_0010s10260 Populus trichocarpa POPTR_0010s10260 N 0.743
PRUPE_ppa009776mg Prunus persica PRUPE_ppa009776mg N 0.713
SapurV1A.0609s0180 Salix purpurea SapurV1A.0609s0180 N 0.765
Sb10g003170 Sorghum bicolor Sb10g003170 N 0.985
Si006951m.g Setaria italica Si006951m.g N 0.985
Solyc05g007100.2 Solanum lycopersicum Solyc05g007100.2 N 0.735
TCM_011795 Theobroma cacao TCM_011795 N 0.743
Thhalv10004763m.g Eutrema salsugineum Thhalv10004763m.g N 0.757
Traes_4AL_FE94301FD Triticum aestivum Traes_4AL_FE94301FD N 0.934
VIT_01s0026g01720 Vitis vinifera VIT_01s0026g01720 N 0.757