POPTR_0001s08710 (Populus trichocarpa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 POPTR_0001s08710 T004566_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.764 0.840
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.764 0.840
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.755 0.760
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.755 0.760
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.755 0.760
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.755 0.760
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.755 0.760
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.755 0.760
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.739 0.800
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.739 0.800
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.739 0.800
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.739 0.800
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.726 0.720
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.725 0.780
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.725 0.780
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.725 0.780
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.701 0.760
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.701 0.760
DREB1E
M09709_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_01 		0.680 0.720
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s08710.1 AP2 49 100

Links

Other AP2 family TFs
Other Populus trichocarpa TFs

202 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TRB1 Arabidopsis thaliana AT1G49950 D
TRB2 Arabidopsis thaliana AT5G67580 D
PK06103.1 Cannabis sativa PK06103.1 D
AMTR_s00007p00193000 Amborella trichopoda AMTR_s00007p00193000 I
AMTR_s00036p00166880 Amborella trichopoda AMTR_s00036p00166880 I
TRB3 Arabidopsis thaliana AT3G49850 I
BGIOSGA003871 Oryza indica BGIOSGA003871 I
Bo1g081300 Brassica oleracea Bo1g081300 I
Bo5g077530 Brassica oleracea Bo5g077530 I
Bo6g018740 Brassica oleracea Bo6g018740 I
Bo7g099090 Brassica oleracea Bo7g099090 I
Bo9g019040 Brassica oleracea Bo9g019040 I
Bra012919 Brassica rapa Bra012919 I
Bra018818 Brassica rapa Bra018818 I
Bra024438 Brassica rapa Bra024438 I
Bra029978 Brassica rapa Bra029978 I
Bra036035 Brassica rapa Bra036035 I
Bra037837 Brassica rapa Bra037837 I
Bra037839 Brassica rapa Bra037839 I
Bra039650 Brassica rapa Bra039650 I
BRADI2G42240 Brachypodium distachyon BRADI2G42240 I
BRADI4G01770 Brachypodium distachyon BRADI4G01770 I
TRB2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8002157 I
TRB1 Arabidopsis lyrata fgenesh2_kg.1__4077__AT1G49950.2 I
TRB3 Arabidopsis lyrata fgenesh2_kg.5__1337__AT3G49850.1 I
GLYMA01G40220 Glycine max GLYMA01G40220 I
GLYMA05G22500 Glycine max GLYMA05G22500 I
GLYMA07G00930 Glycine max GLYMA07G00930 I
GLYMA08G20270 Glycine max GLYMA08G20270 I
GLYMA09G03390 Glycine max GLYMA09G03390 I
GLYMA11G05070 Glycine max GLYMA11G05070 I
GLYMA15G14320 Glycine max GLYMA15G14320 I
GLYMA17G17370 Glycine max GLYMA17G17370 I
GRMZM2G023667 Zea mays GRMZM2G023667 I
GRMZM2G087817 Zea mays GRMZM2G087817 I
GRMZM2G136887 Zea mays GRMZM2G136887 I
GSMUA_Achr2G13040_001 Musa acuminata GSMUA_Achr2G13040_001 I
GSMUA_Achr6G30000_001 Musa acuminata GSMUA_Achr6G30000_001 I
GSMUA_Achr6G31260_001 Musa acuminata GSMUA_Achr6G31260_001 I
GSMUA_Achr7G01090_001 Musa acuminata GSMUA_Achr7G01090_001 I
LPERR01G18090 Leersia perrieri LPERR01G18090 I
MLOC_10278 Hordeum vulgare MLOC_10278 I
MTR_0095s0040 Medicago truncatula MTR_0095s0040 I
MTR_1g041765 Medicago truncatula MTR_1g041765 I
MTR_2g031870 Medicago truncatula MTR_2g031870 I
MTR_2g099610 Medicago truncatula MTR_2g099610 I
MTR_4g097130 Medicago truncatula MTR_4g097130 I
MTR_5g015340 Medicago truncatula MTR_5g015340 I
MTR_8g494240 Medicago truncatula MTR_8g494240 I
OB01G30760 Oryza brachyantha OB01G30760 I
OBART01G21150 Oryza barthii OBART01G21150 I
OLONG_011068 Oryza longistaminata OLONG_011068 I
OMERI01G19490 Oryza meridionalis OMERI01G19490 I
OMERI01G19510 Oryza meridionalis OMERI01G19510 I
ONIVA01G23780 Oryza nivara ONIVA01G23780 I
OPUNC01G21220 Oryza punctata OPUNC01G21220 I
ORGLA01G0168300 Oryza glaberrima ORGLA01G0168300 I
ORUFI01G23880 Oryza rufipogon ORUFI01G23880 I
OS01G0589300 Oryza sativa OS01G0589300 I
OSTLU_27049 Ostreococcus lucimarinus OSTLU_27049 I
PGSC0003DMG400023131 Solanum tuberosum PGSC0003DMG400023131 I
PGSC0003DMG401025742 Solanum tuberosum PGSC0003DMG401025742 I
PGSC0003DMG402003328 Solanum tuberosum PGSC0003DMG402003328 I
POPTR_0001s30000 Populus trichocarpa POPTR_0001s30000 I
POPTR_0006s14940 Populus trichocarpa POPTR_0006s14940 I
POPTR_0007s14920 Populus trichocarpa POPTR_0007s14920 I
POPTR_0009s09020 Populus trichocarpa POPTR_0009s09020 I
POPTR_0014s01010 Populus trichocarpa POPTR_0014s01010 I
POPTR_0018s07040 Populus trichocarpa POPTR_0018s07040 I
PRUPE_ppa007796mg Prunus persica PRUPE_ppa007796mg I
PRUPE_ppa009220mg Prunus persica PRUPE_ppa009220mg I
PRUPE_ppa011492mg Prunus persica PRUPE_ppa011492mg I
Sb03g026470 Sorghum bicolor Sb03g026470 I
SELMODRAFT_413266 Selaginella moellendorffii SELMODRAFT_413266 I
SELMODRAFT_426759 Selaginella moellendorffii SELMODRAFT_426759 I
SELMODRAFT_443975 Selaginella moellendorffii SELMODRAFT_443975 I
SELMODRAFT_49296 Selaginella moellendorffii SELMODRAFT_49296 I
SELMODRAFT_49297 Selaginella moellendorffii SELMODRAFT_49297 I
SELMODRAFT_49312 Selaginella moellendorffii SELMODRAFT_49312 I
Si002403m.g Setaria italica Si002403m.g I
Solyc01g106940.2 Solanum lycopersicum Solyc01g106940.2 I
Solyc02g064630.2 Solanum lycopersicum Solyc02g064630.2 I
Solyc11g044320.1 Solanum lycopersicum Solyc11g044320.1 I
TCM_000807 Theobroma cacao TCM_000807 I
TCM_007242 Theobroma cacao TCM_007242 I
Traes_5AS_8756ECB5A Triticum aestivum Traes_5AS_8756ECB5A I
Traes_5BS_EB206B8BC Triticum aestivum Traes_5BS_EB206B8BC I
Traes_5DS_3EE830A43 Triticum aestivum Traes_5DS_3EE830A43 I
TRIUR3_10613 Triticum urartu TRIUR3_10613 I
VIT_00s1311g00020 Vitis vinifera VIT_00s1311g00020 I
TRB1 Vitis vinifera VIT_03s0091g01030 I
VIT_07s0151g00480 Vitis vinifera VIT_07s0151g00480 I
VIT_11s0016g01890 Vitis vinifera VIT_11s0016g01890 I
Ca_02232 Cicer arietinum Ca_02232 I
Ca_08043 Cicer arietinum Ca_08043 I
Ca_09355 Cicer arietinum Ca_09355 I
Cla006547 Citrullus lanatus Cla006547 I
Cla014248 Citrullus lanatus Cla014248 I
Pm002374 Prunus mume Pm002374 I
Pm021139 Prunus mume Pm021139 I
Pm027209 Prunus mume Pm027209 I
29661.m000926 Ricinus communis 29661.m000926 I
29812.m000204 Ricinus communis 29812.m000204 I
29912.m005376 Ricinus communis 29912.m005376 I
cassava19326.valid.m1 Manihot esculenta cassava19326.valid.m1 I
cassava37744.valid.m1 Manihot esculenta cassava37744.valid.m1 I
cassava43824.valid.m1 Manihot esculenta cassava43824.valid.m1 I
cassava7508.valid.m1 Manihot esculenta cassava7508.valid.m1 I
Cucsa.103240 Cucumis sativus Cucsa.103240 I
Cucsa.298390 Cucumis sativus Cucsa.298390 I
EuGene.0000030935 Micromonas pusilla EuGene.0000030935 I
gw1.1.287.1 Physcomitrella patens gw1.1.287.1 I
gw1.176.27.1 Physcomitrella patens gw1.176.27.1 I
mgf000125m Mimulus guttatus mgf000125m I
mgf009594m Mimulus guttatus mgf009594m I
mgf010975m Mimulus guttatus mgf010975m I
mgf011386m Mimulus guttatus mgf011386m I
Aquca_001_00028 Aquilegia coerulea Aquca_001_00028 I
Aquca_004_00181 Aquilegia coerulea Aquca_004_00181 I
Bostr.0568s0184 Boechera stricta Bostr.0568s0184 I
Bostr.26675s0174 Boechera stricta Bostr.26675s0174 I
Bostr.6864s0256 Boechera stricta Bostr.6864s0256 I
Cagra.0342s0046 Capsella grandiflora Cagra.0342s0046 I
Cagra.2826s0004 Capsella grandiflora Cagra.2826s0004 I
Cagra.4491s0006 Capsella grandiflora Cagra.4491s0006 I
Carubv10009836m.g Capsella rubella Carubv10009836m.g I
Carubv10017722m.g Capsella rubella Carubv10017722m.g I
Carubv10026874m.g Capsella rubella Carubv10026874m.g I
Ciclev10009173m.g Citrus clementina Ciclev10009173m.g I
Ciclev10026089m.g Citrus clementina Ciclev10026089m.g I
Ciclev10028926m.g Citrus clementina Ciclev10028926m.g I
Eucgr.C00865 Eucalyptus grandis Eucgr.C00865 I
Eucgr.H02312 Eucalyptus grandis Eucgr.H02312 I
Eucgr.I01053 Eucalyptus grandis Eucgr.I01053 I
EuGene.0500010080 Micromonas sp RCC299 EuGene.0500010080 I
evm.TU.supercontig_25.81 Carica papaya evm.TU.supercontig_25.81 I
gene05764-v1.0-hybrid Fragaria vesca gene05764-v1.0-hybrid I
gene12682-v1.0-hybrid Fragaria vesca gene12682-v1.0-hybrid I
gene25445-v1.0-hybrid Fragaria vesca gene25445-v1.0-hybrid I
Gorai.003G030800 Gossypium raimondii Gorai.003G030800 I
Gorai.005G230800 Gossypium raimondii Gorai.005G230800 I
Gorai.007G224200 Gossypium raimondii Gorai.007G224200 I
Lus10011546.g Linum usitatissimum Lus10011546.g I
Lus10012092.g Linum usitatissimum Lus10012092.g I
Lus10014653.g Linum usitatissimum Lus10014653.g I
Lus10019260.g Linum usitatissimum Lus10019260.g I
Lus10025203.g Linum usitatissimum Lus10025203.g I
Lus10027621.g Linum usitatissimum Lus10027621.g I
Lus10030935.g Linum usitatissimum Lus10030935.g I
Lus10033775.g Linum usitatissimum Lus10033775.g I
Lus10040111.g Linum usitatissimum Lus10040111.g I
MDP0000234807 Malus domestica MDP0000234807 I
MDP0000239354 Malus domestica MDP0000239354 I
MDP0000265359 Malus domestica MDP0000265359 I
orange1.1g020653m.g Citrus sinensis orange1.1g020653m.g I
orange1.1g022048m.g Citrus sinensis orange1.1g022048m.g I
orange1.1g024128m.g Citrus sinensis orange1.1g024128m.g I
Pavir.Ea02064 Panicum virgatum Pavir.Ea02064 I
Pavir.J27218 Panicum virgatum Pavir.J27218 I
SapurV1A.0005s0260 Salix purpurea SapurV1A.0005s0260 I
SapurV1A.0019s0460 Salix purpurea SapurV1A.0019s0460 I
SapurV1A.0087s0150 Salix purpurea SapurV1A.0087s0150 I
SapurV1A.0108s0150 Salix purpurea SapurV1A.0108s0150 I
SapurV1A.0235s0100 Salix purpurea SapurV1A.0235s0100 I
SapurV1A.1368s0050 Salix purpurea SapurV1A.1368s0050 I
Thhalv10004691m.g Eutrema salsugineum Thhalv10004691m.g I
Thhalv10010562m.g Eutrema salsugineum Thhalv10010562m.g I
Thhalv10011686m.g Eutrema salsugineum Thhalv10011686m.g I
PK00568.1 Cannabis sativa PK00568.1 I
PK19870.1 Cannabis sativa PK19870.1 I
LjT25P15.150.nd Lotus japonicus LjT25P15.150.nd I
PDK_20s1413011g001 Phoenix dactylifera PDK_20s1413011g001 I
PDK_20s1467521g002 Phoenix dactylifera PDK_20s1467521g002 I
PDK_20s1888511g002 Phoenix dactylifera PDK_20s1888511g002 I