POPTR_0016s05360 (Populus trichocarpa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 POPTR_0016s05360 T004735_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.815 0.980
DREB2F
M06630_2.00 		Arabidopsis thaliana
YCDCCRCCGCY
RGCGGYGGHGR		 Dap-seq
OMalley et al.(2016)
AT3G57600_col_a 		0.765 0.900
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.685 0.780
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.681 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0016s05360.1 AP2 28 79

Links

Other AP2 family TFs
Other Populus trichocarpa TFs

118 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RGD1304587 Rattus norvegicus ENSRNOG00000002944 I 0.000
C1orf35 Otolemur garnettii ENSOGAG00000010978 I 0.000
OMERI10G00680 Oryza meridionalis OMERI10G00680 I 0.000
Traes_4BL_011308A76 Triticum aestivum Traes_4BL_011308A76 I 0.000
Ciclev10015354m.g Citrus clementina Ciclev10015354m.g N 0.000
chr4.CM0387.290.nc Lotus japonicus chr4.CM0387.290.nc N 0.000
Eucgr.G02067 Eucalyptus grandis Eucgr.G02067 N 0.000
evm.TU.supercontig_2.121 Carica papaya evm.TU.supercontig_2.121 N 0.000
gene00620-v1.0-hybrid Fragaria vesca gene00620-v1.0-hybrid N 0.000
Gorai.002G171200 Gossypium raimondii Gorai.002G171200 N 0.000
Gorai.005G154200 Gossypium raimondii Gorai.005G154200 N 0.000
Gorai.012G183100 Gossypium raimondii Gorai.012G183100 N 0.000
Gorai.012G183200 Gossypium raimondii Gorai.012G183200 N 0.000
Lus10023543.g Linum usitatissimum Lus10023543.g N 0.000
Lus10040427.g Linum usitatissimum Lus10040427.g N 0.000
MDP0000320521 Malus domestica MDP0000320521 N 0.000
MDP0000826219 Malus domestica MDP0000826219 N 0.000
orange1.1g022806m.g Citrus sinensis orange1.1g022806m.g N 0.000
SapurV1A.0015s0840 Salix purpurea SapurV1A.0015s0840 N 0.000
SapurV1A.0055s0040 Salix purpurea SapurV1A.0055s0040 N 0.000
PK28293.1 Cannabis sativa PK28293.1 N 0.000
VIT_01s0011g06380 Vitis vinifera VIT_01s0011g06380 N 0.000
GLYMA05G26790 Glycine max GLYMA05G26790 N 0.000
GLYMA08G09780 Glycine max GLYMA08G09780 N 0.000
PGSC0003DMG402029444 Solanum tuberosum PGSC0003DMG402029444 N 0.000
POPTR_0008s13960 Populus trichocarpa POPTR_0008s13960 N 0.000
POPTR_0010s11180 Populus trichocarpa POPTR_0010s11180 N 0.000
PRUPE_ppa009765mg Prunus persica PRUPE_ppa009765mg N 0.000
Solyc04g008380.2 Solanum lycopersicum Solyc04g008380.2 N 0.000
TCM_011212 Theobroma cacao TCM_011212 N 0.000
Cucsa.026600 Cucumis sativus Cucsa.026600 N 0.000
VIT_17s0000g01860 Vitis vinifera VIT_17s0000g01860 N 0.000
Cla005911 Citrullus lanatus Cla005911 N 0.000
Cla005912 Citrullus lanatus Cla005912 N 0.000
Pm005924 Prunus mume Pm005924 N 0.000
29780.m001393 Ricinus communis 29780.m001393 N 0.000
cassava18077.valid.m1 Manihot esculenta cassava18077.valid.m1 N 0.000
cassava18078.valid.m1 Manihot esculenta cassava18078.valid.m1 N 0.000
Cucsa.026590 Cucumis sativus Cucsa.026590 N 0.000