Lus10034902.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10034902.g T008897_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.743 0.860
Q8H769_WHEAT
M09721_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1_01 		0.715 0.820
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.683 0.780
Q1ESI9_MAIZE
M09714_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB2A_02 		0.680 0.820
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.679 0.780
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.679 0.780
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.679 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10034902 AP2 73 124

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

181 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OMERI10G00680 Oryza meridionalis OMERI10G00680 I 0.000
Pavir.Ia04968 Panicum virgatum Pavir.Ia04968 N 0.000
BGIOSGA032378 Oryza indica BGIOSGA032378 N 0.000
Traes_4DL_AE5093871 Triticum aestivum Traes_4DL_AE5093871 N 0.000
Traes_4AS_48979CBE1 Triticum aestivum Traes_4AS_48979CBE1 N 0.000
Si036337m.g Setaria italica Si036337m.g N 0.000
Si029480m.g Setaria italica Si029480m.g N 0.000
OS10G0115500 Oryza sativa OS10G0115500 N 0.000
OS10G0115200 Oryza sativa OS10G0115200 N 0.000
OS10G0114500 Oryza sativa OS10G0114500 N 0.000
ORUFI10G00650 Oryza rufipogon ORUFI10G00650 N 0.000
ORUFI10G00640 Oryza rufipogon ORUFI10G00640 N 0.000
OPUNC10G00600 Oryza punctata OPUNC10G00600 N 0.000
OPUNC03G13410 Oryza punctata OPUNC03G13410 N 0.000
ONIVA10G01080 Oryza nivara ONIVA10G01080 N 0.000
OMERI10G00690 Oryza meridionalis OMERI10G00690 N 0.000
OLONG_022525 Oryza longistaminata OLONG_022525 N 0.000
OGLUM10G00640 Oryza glumaepatula OGLUM10G00640 N 0.000
OGLUM10G00630 Oryza glumaepatula OGLUM10G00630 N 0.000
OGLUM10G00620 Oryza glumaepatula OGLUM10G00620 N 0.000
OBART10G00650 Oryza barthii OBART10G00650 N 0.000
OBART10G00640 Oryza barthii OBART10G00640 N 0.000
OB10G10650 Oryza brachyantha OB10G10650 N 0.000
MLOC_13459 Hordeum vulgare MLOC_13459 N 0.000
LPERR10G00510 Leersia perrieri LPERR10G00510 N 0.000
LPERR10G00500 Leersia perrieri LPERR10G00500 N 0.000
F775_06914 Aegilops tauschii F775_06914 N 0.000
BRADI3G21390 Brachypodium distachyon BRADI3G21390 N 0.000
BRADI3G21380 Brachypodium distachyon BRADI3G21380 N 0.000
BGIOSGA032380 Oryza indica BGIOSGA032380 N 0.000