Pavir.J16149 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.J16149 T009579_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
P93392_TOBAC
M09731_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$OPBP1_01 		0.756 0.878
ERF094
M01602_2.00 		Arabidopsis thaliana
VGCCGCCD
HGGCGGCB		 PBM
Weirauch et al.(2014)
pTH8276 		0.749 0.816
ERF15
M00718_2.00 		Arabidopsis thaliana
NGSCGSCB
VGSCGSCN		 PBM
Chang et al.(2013)
pTH7336 		0.700 0.837
ERF15
M06604_2.00 		Arabidopsis thaliana
NNNHNNHDBMGCCGCCDY
RHGGCGGCKVHDNNDNNN		 Dap-seq
OMalley et al.(2016)
ERF15_colamp_a 		0.700 0.837
ERF15
M06605_2.00 		Arabidopsis thaliana
NNYHDYMGCCGCCRY
RYGGCGGCKRHDRNN		 Dap-seq
OMalley et al.(2016)
ERF15_col 		0.700 0.837
ERF1B
M01619_2.00 		Arabidopsis thaliana
NMGCCGCCRN
NYGGCGGCKN		 PBM
Weirauch et al.(2014)
pTH8795 		0.692 0.837
ERF1B
M06626_2.00 		Arabidopsis thaliana
NHNNHDYMGCCGCCRYHDNHDNNNNNNN
NNNNNNNHDNHDRYGGCGGCKRHDNNDN		 Dap-seq
OMalley et al.(2016)
ERF1_col_a 		0.692 0.837
ERF1B
M06627_2.00 		Arabidopsis thaliana
MGCCGCCD
HGGCGGCK		 Dap-seq
OMalley et al.(2016)
ERF1_colamp_a 		0.692 0.837
ERF1B
M09703_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF1_Q2_01 		0.692 0.837
ERF1B
M09704_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF1_Q2 		0.692 0.837
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J16149.1.p AP2 92 144

Links

Other AP2 family TFs
Other Panicum virgatum TFs

365 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g024860m.g Citrus sinensis orange1.1g024860m.g I
VIT_12s0134g00480 Vitis vinifera VIT_12s0134g00480 I
VIT_12s0134g00490 Vitis vinifera VIT_12s0134g00490 I
TCM_030020 Theobroma cacao TCM_030020 I
TCM_007868 Theobroma cacao TCM_007868 I
TCM_007865 Theobroma cacao TCM_007865 I
Solyc07g054980.1 Solanum lycopersicum Solyc07g054980.1 I
Lus10039734.g Linum usitatissimum Lus10039734.g I
Lus10039735.g Linum usitatissimum Lus10039735.g I
Gorai.013G072900 Gossypium raimondii Gorai.013G072900 I
POPTR_0019s14120 Populus trichocarpa POPTR_0019s14120 I
POPTR_0013s14560 Populus trichocarpa POPTR_0013s14560 I
MDP0000155426 Malus domestica MDP0000155426 I
Gorai.013G071600 Gossypium raimondii Gorai.013G071600 I
cassava6764.valid.m1 Manihot esculenta cassava6764.valid.m1 I
Ciclev10016303m.g Citrus clementina Ciclev10016303m.g I
SapurV1A.0417s0130 Salix purpurea SapurV1A.0417s0130 I
GSMUA_Achr11G22820_001 Musa acuminata GSMUA_Achr11G22820_001 I
GLYMA13G37903 Glycine max GLYMA13G37903 I
Ciclev10017679m.g Citrus clementina Ciclev10017679m.g I
GLYMA12G32530 Glycine max GLYMA12G32530 I
SapurV1A.0417s0150 Salix purpurea SapurV1A.0417s0150 I
Eucgr.A01766 Eucalyptus grandis Eucgr.A01766 I
Gorai.012G132400 Gossypium raimondii Gorai.012G132400 I
GLYMA12G11330 Glycine max GLYMA12G11330 I
GLYMA06G45554 Glycine max GLYMA06G45554 I
Gorai.002G016800 Gossypium raimondii Gorai.002G016800 I
Lus10039772.g Linum usitatissimum Lus10039772.g N
Lus10018547.g Linum usitatissimum Lus10018547.g N
Gorai.005G206800 Gossypium raimondii Gorai.005G206800 N
Lus10031607.g Linum usitatissimum Lus10031607.g N
Lus10033738.g Linum usitatissimum Lus10033738.g N
Ca_22597 Cicer arietinum Ca_22597 N
MDP0000407613 Malus domestica MDP0000407613 N
orange1.1g037956m.g Citrus sinensis orange1.1g037956m.g N
SapurV1A.0048s0160 Salix purpurea SapurV1A.0048s0160 N
SapurV1A.0417s0140 Salix purpurea SapurV1A.0417s0140 N
PK24260.1 Cannabis sativa PK24260.1 N
chr3.LjT47O18.40.nc Lotus japonicus chr3.LjT47O18.40.nc N
chr3.LjT47O18.60.nc Lotus japonicus chr3.LjT47O18.60.nc N
chr3.LjT47O18.70.nc Lotus japonicus chr3.LjT47O18.70.nc N
PGSC0003DMG400013752 Solanum tuberosum PGSC0003DMG400013752 N
GLYMA06G45540 Glycine max GLYMA06G45540 N
GLYMA06G45547 Glycine max GLYMA06G45547 N
GLYMA12G11340 Glycine max GLYMA12G11340 N
GLYMA12G11390 Glycine max GLYMA12G11390 N
GLYMA12G11490 Glycine max GLYMA12G11490 N
GLYMA12G32541 Glycine max GLYMA12G32541 N
MTR_0008s0470 Medicago truncatula MTR_0008s0470 N
MTR_0251s0050 Medicago truncatula MTR_0251s0050 N
MTR_2g089420 Medicago truncatula MTR_2g089420 N
MTR_2g089450 Medicago truncatula MTR_2g089450 N
gene01998-v1.0-hybrid Fragaria vesca gene01998-v1.0-hybrid N
PGSC0003DMG400015087 Solanum tuberosum PGSC0003DMG400015087 N
POPTR_0019s14140 Populus trichocarpa POPTR_0019s14140 N
PRUPE_ppa026553mg Prunus persica PRUPE_ppa026553mg N
Solyc03g093940.1 Solanum lycopersicum Solyc03g093940.1 N
Solyc12g005640.1 Solanum lycopersicum Solyc12g005640.1 N
VIT_00s0203g00170 Vitis vinifera VIT_00s0203g00170 N
GLYMA06G45520 Glycine max GLYMA06G45520 N
Pm015302 Prunus mume Pm015302 N
cassava26894.m1 Manihot esculenta cassava26894.m1 N
evm.TU.supercontig_34.62 Carica papaya evm.TU.supercontig_34.62 N