Pavir.J25464 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.J25464 T009610_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q1ESI9_MAIZE
M09714_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB2A_02 		0.702 0.816
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J25464.1.p AP2 147 198

Links

Other AP2 family TFs
Other Panicum virgatum TFs

71 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Q1ESI9_MAIZE Zea mays Q1ESI9_MAIZE D 0.702
Traes_2DL_B32203C91 Triticum aestivum Traes_2DL_B32203C91 I 0.809
mgf017629m Mimulus guttatus mgf017629m I 0.692
Cucsa.231820 Cucumis sativus Cucsa.231820 I 0.702
Cucsa.119440 Cucumis sativus Cucsa.119440 I 0.685
Pm018989 Prunus mume Pm018989 I 0.716
Cla022803 Citrullus lanatus Cla022803 I 0.702
Cla001755 Citrullus lanatus Cla001755 I 0.685
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.678
TRIUR3_17409 Triticum urartu TRIUR3_17409 I 0.699
Aquca_013_00679 Aquilegia coerulea Aquca_013_00679 I 0.730
Traes_2BL_B397F2CE3 Triticum aestivum Traes_2BL_B397F2CE3 I 0.803
Traes_2AL_3FB37A3E7 Triticum aestivum Traes_2AL_3FB37A3E7 I 0.790
Traes_1BL_BDF0801D01 Triticum aestivum Traes_1BL_BDF0801D01 I 0.699
Traes_1AL_A9FB6BF52 Triticum aestivum Traes_1AL_A9FB6BF52 I 0.699
TCM_026121 Theobroma cacao TCM_026121 I 0.723
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.683
Si024059m.g Setaria italica Si024059m.g I 0.809
Lus10024298.g Linum usitatissimum Lus10024298.g I 0.714
chr1.CM0195.510.nd Lotus japonicus chr1.CM0195.510.nd I 0.719
Pavir.J22169 Panicum virgatum Pavir.J22169 I 0.809
Pavir.Cb01298 Panicum virgatum Pavir.Cb01298 I 0.697
Pavir.Ca01725 Panicum virgatum Pavir.Ca01725 I 0.697
MDP0000446783 Malus domestica MDP0000446783 I 0.716
MDP0000250927 Malus domestica MDP0000250927 I 0.696
MDP0000165880 Malus domestica MDP0000165880 I 0.717
MDP0000147009 Malus domestica MDP0000147009 I 0.716
Si022619m.g Setaria italica Si022619m.g I 0.697
Lus10010632.g Linum usitatissimum Lus10010632.g I 0.706
Lus10006127.g Linum usitatissimum Lus10006127.g I 0.714
gene21047-v1.0-hybrid Fragaria vesca gene21047-v1.0-hybrid I 0.709
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.701
Eucgr.F01607 Eucalyptus grandis Eucgr.F01607 I 0.710
Ciclev10022244m.g Citrus clementina Ciclev10022244m.g I 0.708
Bostr.23794s0027 Boechera stricta Bostr.23794s0027 I 0.700
Aquca_030_00214 Aquilegia coerulea Aquca_030_00214 I 0.740
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I 0.690
OB08G30790 Oryza brachyantha OB08G30790 I 0.783
MTR_3g112440 Medicago truncatula MTR_3g112440 I 0.684
MLOC_66580 Hordeum vulgare MLOC_66580 I 0.809
MLOC_12223 Hordeum vulgare MLOC_12223 I 0.807
LPERR08G20650 Leersia perrieri LPERR08G20650 I 0.769
LPERR08G12790 Leersia perrieri LPERR08G12790 I 0.743
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.677
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.705
OGLUM08G25470 Oryza glumaepatula OGLUM08G25470 I 0.783
GRMZM2G156737 Zea mays GRMZM2G156737 I 0.737
GRMZM2G028386 Zea mays GRMZM2G028386 I 0.727
GRMZM2G006745 Zea mays GRMZM2G006745 I 0.702
F775_32062 Aegilops tauschii F775_32062 I 0.699
F775_02345 Aegilops tauschii F775_02345 I 0.809
F775_01779 Aegilops tauschii F775_01779 I 0.795
BRADI3G12680 Brachypodium distachyon BRADI3G12680 I 0.783
BGIOSGA026464 Oryza indica BGIOSGA026464 I 0.783
OMERI08G18820 Oryza meridionalis OMERI08G18820 I 0.783
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.678
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.678
Sb09g016150 Sorghum bicolor Sb09g016150 I 0.702
Sb07g023575 Sorghum bicolor Sb07g023575 I 0.712
PRUPE_ppa022996mg Prunus persica PRUPE_ppa022996mg I 0.699
PRUPE_ppa007606mg Prunus persica PRUPE_ppa007606mg I 0.716
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.683
DREB2C Oryza sativa OS08G0565200 I 0.783
ORUFI08G26490 Oryza rufipogon ORUFI08G26490 I 0.783
ORGLA08G0193700 Oryza glaberrima ORGLA08G0193700 I 0.783
OPUNC08G21890 Oryza punctata OPUNC08G21890 I 0.783
ONIVA09G01190 Oryza nivara ONIVA09G01190 I 0.783
BGIOSGA026461 Oryza indica BGIOSGA026461 I 0.783
TRIUR3_03342 Triticum urartu TRIUR3_03342 N 0.782
SELMODRAFT_38498 Selaginella moellendorffii SELMODRAFT_38498 N 0.688
SELMODRAFT_38500 Selaginella moellendorffii SELMODRAFT_38500 N 0.688