CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra029562
(
Brassica rapa
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
Bra029562
T031517_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra029562.1-P
bHLH
161
201
KVRKEKLGDRVTALQQLVSPFGKTDTASVLNEAVEYIKFLQ
Links
Other
bHLH
family TFs
Other
Brassica rapa
TFs
221 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Al_scaffold_0006_3588
Arabidopsis lyrata
Al_scaffold_0006_3588
N
0.902
BHLH110
Arabidopsis thaliana
AT1G27660
N
0.891
BHLH154
Arabidopsis thaliana
AT2G31730
N
0.847
BHLH123
Arabidopsis thaliana
AT3G20640
N
0.866
AT4G05170
Arabidopsis thaliana
AT4G05170
N
0.902
BHLH103
Arabidopsis thaliana
AT4G21340
N
0.870
BGIOSGA000686
Oryza indica
BGIOSGA000686
N
0.867
BGIOSGA017200
Oryza indica
BGIOSGA017200
N
0.867
BGIOSGA020126
Oryza indica
BGIOSGA020126
N
0.867
BGIOSGA020128
Oryza indica
BGIOSGA020128
N
0.867
Bo01052s010
Brassica oleracea
Bo01052s010
N
0.866
Bo1g024090
Brassica oleracea
Bo1g024090
N
0.846
Bo3g026410
Brassica oleracea
Bo3g026410
N
0.857
Bo3g076150
Brassica oleracea
Bo3g076150
N
0.866
Bo4g049510
Brassica oleracea
Bo4g049510
N
0.846
Bo9g076250
Brassica oleracea
Bo9g076250
N
0.914
Bra001798
Brassica rapa
Bra001798
N
0.866
Bra005644
Brassica rapa
Bra005644
N
0.846
Bra013520
Brassica rapa
Bra013520
N
0.870
Bra035761
Brassica rapa
Bra035761
N
0.853
F775_12027
Aegilops tauschii
F775_12027
N
0.867
F775_20405
Aegilops tauschii
F775_20405
N
0.867
fgenesh2_kg.1__2924__AT1G27660.1
Arabidopsis lyrata
fgenesh2_kg.1__2924__AT1G27660.1
N
0.891
GLYMA06G40760
Glycine max
GLYMA06G40760
N
0.866
GLYMA12G17630
Glycine max
GLYMA12G17630
N
0.866
GLYMA12G34490
Glycine max
GLYMA12G34490
N
0.866
GLYMA13G32320
Glycine max
GLYMA13G32320
N
0.867
GLYMA13G36010
Glycine max
GLYMA13G36010
N
0.866
GLYMA15G07010
Glycine max
GLYMA15G07010
N
0.867
GLYMA16G24661
Glycine max
GLYMA16G24661
N
0.855
GRMZM2G004732
Zea mays
GRMZM2G004732
N
0.867
GRMZM2G155217
Zea mays
GRMZM2G155217
N
0.867
GRMZM2G313058
Zea mays
GRMZM2G313058
N
0.867
GRMZM2G440529
Zea mays
GRMZM2G440529
N
0.867
GSMUA_Achr10G04860_001
Musa acuminata
GSMUA_Achr10G04860_001
N
0.867
GSMUA_Achr11G18680_001
Musa acuminata
GSMUA_Achr11G18680_001
N
0.867
GSMUA_Achr4G33630_001
Musa acuminata
GSMUA_Achr4G33630_001
N
0.867
GSMUA_Achr5G26430_001
Musa acuminata
GSMUA_Achr5G26430_001
N
0.867
GSMUA_Achr6G24280_001
Musa acuminata
GSMUA_Achr6G24280_001
N
0.891
GSMUA_Achr9G12100_001
Musa acuminata
GSMUA_Achr9G12100_001
N
0.867
GSMUA_Achr9G24670_001
Musa acuminata
GSMUA_Achr9G24670_001
N
0.867
LPERR01G28830
Leersia perrieri
LPERR01G28830
N
0.867
MLOC_37666
Hordeum vulgare
MLOC_37666
N
0.867
MLOC_57076
Hordeum vulgare
MLOC_57076
N
0.891
MLOC_72940
Hordeum vulgare
MLOC_72940
N
0.867
MTR_2g011070
Medicago truncatula
MTR_2g011070
N
0.867
MTR_2g081820
Medicago truncatula
MTR_2g081820
N
0.866
MTR_3g112170
Medicago truncatula
MTR_3g112170
N
0.891
MTR_8g466800
Medicago truncatula
MTR_8g466800
N
0.866
OB04G33270
Oryza brachyantha
OB04G33270
N
0.867
OB05G29420
Oryza brachyantha
OB05G29420
N
0.867
OB08G14900
Oryza brachyantha
OB08G14900
N
0.867
OBART01G33360
Oryza barthii
OBART01G33360
N
0.867
OBART04G24870
Oryza barthii
OBART04G24870
N
0.867
OBART05G21860
Oryza barthii
OBART05G21860
N
0.867
OGLUM01G37590
Oryza glumaepatula
OGLUM01G37590
N
0.867
OGLUM04G26290
Oryza glumaepatula
OGLUM04G26290
N
0.867
OGLUM05G23050
Oryza glumaepatula
OGLUM05G23050
N
0.867
OLONG_006510
Oryza longistaminata
OLONG_006510
N
0.867
OLONG_021979
Oryza longistaminata
OLONG_021979
N
0.891
OLONG_026655
Oryza longistaminata
OLONG_026655
N
0.867
OMERI01G30260
Oryza meridionalis
OMERI01G30260
N
0.867
OMERI04G21930
Oryza meridionalis
OMERI04G21930
N
0.867
OMERI12G12400
Oryza meridionalis
OMERI12G12400
N
0.867
ONIVA01G38120
Oryza nivara
ONIVA01G38120
N
0.867
ONIVA03G13290
Oryza nivara
ONIVA03G13290
N
0.867
ONIVA05G22530
Oryza nivara
ONIVA05G22530
N
0.867
OPUNC01G00360
Oryza punctata
OPUNC01G00360
N
0.891
OPUNC01G32440
Oryza punctata
OPUNC01G32440
N
0.867
OPUNC04G23980
Oryza punctata
OPUNC04G23980
N
0.867
ORGLA04G0213700
Oryza glaberrima
ORGLA04G0213700
N
0.867
ORGLA05G0190400
Oryza glaberrima
ORGLA05G0190400
N
0.867
ORUFI01G36520
Oryza rufipogon
ORUFI01G36520
N
0.867
ORUFI05G23130
Oryza rufipogon
ORUFI05G23130
N
0.867
ORUFI06G19010
Oryza rufipogon
ORUFI06G19010
N
0.867
OS04G0631600
Oryza sativa
OS04G0631600
N
0.867
PGSC0003DMG400003746
Solanum tuberosum
PGSC0003DMG400003746
N
0.891
PGSC0003DMG400005064
Solanum tuberosum
PGSC0003DMG400005064
N
0.866
PGSC0003DMG400013875
Solanum tuberosum
PGSC0003DMG400013875
N
0.867
PGSC0003DMG400019236
Solanum tuberosum
PGSC0003DMG400019236
N
0.866
PGSC0003DMG400025020
Solanum tuberosum
PGSC0003DMG400025020
N
0.866
POPTR_0002s03380
Populus trichocarpa
POPTR_0002s03380
N
0.891
POPTR_0004s02870
Populus trichocarpa
POPTR_0004s02870
N
0.867
POPTR_0005s12150
Populus trichocarpa
POPTR_0005s12150
N
0.867
POPTR_0005s25240
Populus trichocarpa
POPTR_0005s25240
N
0.891
POPTR_0007s13360
Populus trichocarpa
POPTR_0007s13360
N
0.867
POPTR_0011s03560
Populus trichocarpa
POPTR_0011s03560
N
0.867
POPTR_0011s13320
Populus trichocarpa
POPTR_0011s13320
N
0.866
POPTR_0013s13050
Populus trichocarpa
POPTR_0013s13050
N
0.847
POPTR_0019s12530
Populus trichocarpa
POPTR_0019s12530
N
0.847
PRUPE_ppa005486mg
Prunus persica
PRUPE_ppa005486mg
N
0.891
PRUPE_ppa005924mg
Prunus persica
PRUPE_ppa005924mg
N
0.867
PRUPE_ppa012528mg
Prunus persica
PRUPE_ppa012528mg
N
0.847
PRUPE_ppa023041mg
Prunus persica
PRUPE_ppa023041mg
N
0.866
Sb03g008830
Sorghum bicolor
Sb03g008830
N
0.891
Sb03g036670
Sorghum bicolor
Sb03g036670
N
0.867
Sb07g004980
Sorghum bicolor
Sb07g004980
N
0.867
Sb09g024720
Sorghum bicolor
Sb09g024720
N
0.867
Si001796m.g
Setaria italica
Si001796m.g
N
0.867
Si010139m.g
Setaria italica
Si010139m.g
N
0.867
Si013853m.g
Setaria italica
Si013853m.g
N
0.867
Si022548m.g
Setaria italica
Si022548m.g
N
0.867
Solyc02g079760.2
Solanum lycopersicum
Solyc02g079760.2
N
0.867
Solyc02g084880.2
Solanum lycopersicum
Solyc02g084880.2
N
0.891
Solyc03g031450.2
Solanum lycopersicum
Solyc03g031450.2
N
0.867
Solyc04g080710.2
Solanum lycopersicum
Solyc04g080710.2
N
0.891
Solyc07g063830.2
Solanum lycopersicum
Solyc07g063830.2
N
0.866
Solyc10g006640.2
Solanum lycopersicum
Solyc10g006640.2
N
0.866
TCM_019871
Theobroma cacao
TCM_019871
N
0.847
TCM_030051
Theobroma cacao
TCM_030051
N
0.867
TCM_031172
Theobroma cacao
TCM_031172
N
0.866
TCM_034098
Theobroma cacao
TCM_034098
N
0.891
Traes_2AL_70AE1B8B8
Triticum aestivum
Traes_2AL_70AE1B8B8
N
0.867
Traes_2BL_A014BCC51
Triticum aestivum
Traes_2BL_A014BCC51
N
0.867
Traes_2BL_E82F7902D
Triticum aestivum
Traes_2BL_E82F7902D
N
0.867
Traes_2DL_DCD7B13A8
Triticum aestivum
Traes_2DL_DCD7B13A8
N
0.867
TRIUR3_00968
Triticum urartu
TRIUR3_00968
N
0.867
VIT_00s0274g00070
Vitis vinifera
VIT_00s0274g00070
N
0.867
VIT_04s0023g02410
Vitis vinifera
VIT_04s0023g02410
N
0.867
VIT_05s0094g00480
Vitis vinifera
VIT_05s0094g00480
N
0.870
VIT_18s0001g12970
Vitis vinifera
VIT_18s0001g12970
N
0.891
VIT_19s0014g04670
Vitis vinifera
VIT_19s0014g04670
N
0.866
Ca_00214
Cicer arietinum
Ca_00214
N
0.867
Ca_04928
Cicer arietinum
Ca_04928
N
0.891
Ca_06936
Cicer arietinum
Ca_06936
N
0.866
Ca_19891
Cicer arietinum
Ca_19891
N
0.866
Cla003883
Citrullus lanatus
Cla003883
N
0.866
Cla021101
Citrullus lanatus
Cla021101
N
0.891
Pm005865
Prunus mume
Pm005865
N
0.891
Pm007388
Prunus mume
Pm007388
N
0.847
Pm009855
Prunus mume
Pm009855
N
0.867
Pm011692
Prunus mume
Pm011692
N
0.866
27733.m000033
Ricinus communis
27733.m000033
N
0.866
28405.m000015
Ricinus communis
28405.m000015
N
0.847
29842.m003704
Ricinus communis
29842.m003704
N
0.867
30170.m014085
Ricinus communis
30170.m014085
N
0.891
cassava13240.valid.m1
Manihot esculenta
cassava13240.valid.m1
N
0.867
cassava19346.valid.m1
Manihot esculenta
cassava19346.valid.m1
N
0.867
cassava21180.m1
Manihot esculenta
cassava21180.m1
N
0.847
cassava28105.m1
Manihot esculenta
cassava28105.m1
N
0.866
cassava36740.valid.m1
Manihot esculenta
cassava36740.valid.m1
N
0.847
cassava36956.valid.m1
Manihot esculenta
cassava36956.valid.m1
N
0.866
cassava37772.valid.m1
Manihot esculenta
cassava37772.valid.m1
N
0.847
cassava37773.valid.m1
Manihot esculenta
cassava37773.valid.m1
N
0.847
cassava42530.valid.m1
Manihot esculenta
cassava42530.valid.m1
N
0.891
Cucsa.059580
Cucumis sativus
Cucsa.059580
N
0.866
Cucsa.125970
Cucumis sativus
Cucsa.125970
N
0.864
Cucsa.342640
Cucumis sativus
Cucsa.342640
N
0.891
Cucsa.359290
Cucumis sativus
Cucsa.359290
N
0.891
mgf001258m
Mimulus guttatus
mgf001258m
N
0.866
mgf008488m
Mimulus guttatus
mgf008488m
N
0.867
mgf013138m
Mimulus guttatus
mgf013138m
N
0.891
mgf016565m
Mimulus guttatus
mgf016565m
N
0.867
Aquca_010_00556
Aquilegia coerulea
Aquca_010_00556
N
0.891
Aquca_028_00271
Aquilegia coerulea
Aquca_028_00271
N
0.867
Bostr.10689s0083
Boechera stricta
Bostr.10689s0083
N
0.870
Bostr.19424s0583
Boechera stricta
Bostr.19424s0583
N
0.866
Bostr.26675s0184
Boechera stricta
Bostr.26675s0184
N
0.870
Bostr.2983s0058
Boechera stricta
Bostr.2983s0058
N
0.902
Cagra.0316s0001
Capsella grandiflora
Cagra.0316s0001
N
0.866
Cagra.1062s0002
Capsella grandiflora
Cagra.1062s0002
N
0.881
Cagra.1981s0012
Capsella grandiflora
Cagra.1981s0012
N
0.902
Carubv10003683m.g
Capsella rubella
Carubv10003683m.g
N
0.902
Carubv10006994m.g
Capsella rubella
Carubv10006994m.g
N
0.881
Carubv10013632m.g
Capsella rubella
Carubv10013632m.g
N
0.866
Ciclev10001291m.g
Citrus clementina
Ciclev10001291m.g
N
0.891
Ciclev10008228m.g
Citrus clementina
Ciclev10008228m.g
N
0.866
Ciclev10015039m.g
Citrus clementina
Ciclev10015039m.g
N
0.867
Eucgr.D00881
Eucalyptus grandis
Eucgr.D00881
N
0.914
Eucgr.E03614
Eucalyptus grandis
Eucgr.E03614
N
0.867
Eucgr.F03384
Eucalyptus grandis
Eucgr.F03384
N
0.866
evm.TU.supercontig_12.1
Carica papaya
evm.TU.supercontig_12.1
N
0.866
evm.TU.supercontig_27.162
Carica papaya
evm.TU.supercontig_27.162
N
0.867
evm.TU.supercontig_99.32
Carica papaya
evm.TU.supercontig_99.32
N
0.891
gene03259-v1.0-hybrid
Fragaria vesca
gene03259-v1.0-hybrid
N
0.866
gene11847-v1.0-hybrid
Fragaria vesca
gene11847-v1.0-hybrid
N
0.891
gene30665-v1.0-hybrid
Fragaria vesca
gene30665-v1.0-hybrid
N
0.867
Gorai.002G079200
Gossypium raimondii
Gorai.002G079200
N
0.866
Gorai.006G085000
Gossypium raimondii
Gorai.006G085000
N
0.867
Gorai.009G175300
Gossypium raimondii
Gorai.009G175300
N
0.867
Gorai.009G199600
Gossypium raimondii
Gorai.009G199600
N
0.891
Gorai.009G429100
Gossypium raimondii
Gorai.009G429100
N
0.866
Gorai.010G147100
Gossypium raimondii
Gorai.010G147100
N
0.867
Gorai.011G020100
Gossypium raimondii
Gorai.011G020100
N
0.867
Lus10007613.g
Linum usitatissimum
Lus10007613.g
N
0.867
Lus10018400.g
Linum usitatissimum
Lus10018400.g
N
0.867
Lus10025987.g
Linum usitatissimum
Lus10025987.g
N
0.867
Lus10038550.g
Linum usitatissimum
Lus10038550.g
N
0.866
MDP0000168695
Malus domestica
MDP0000168695
N
0.891
MDP0000262020
Malus domestica
MDP0000262020
N
0.891
MDP0000295440
Malus domestica
MDP0000295440
N
0.866
MDP0000296508
Malus domestica
MDP0000296508
N
0.866
MDP0000301999
Malus domestica
MDP0000301999
N
0.867
MDP0000687814
Malus domestica
MDP0000687814
N
0.891
orange1.1g011373m.g
Citrus sinensis
orange1.1g011373m.g
N
0.867
orange1.1g035657m.g
Citrus sinensis
orange1.1g035657m.g
N
0.891
Pavir.Ea03112
Panicum virgatum
Pavir.Ea03112
N
0.867
Pavir.Eb03429
Panicum virgatum
Pavir.Eb03429
N
0.867
Pavir.Ga00384
Panicum virgatum
Pavir.Ga00384
N
0.867
Pavir.J10443
Panicum virgatum
Pavir.J10443
N
0.867
Pavir.J13928
Panicum virgatum
Pavir.J13928
N
0.867
Pavir.J25904
Panicum virgatum
Pavir.J25904
N
0.867
SapurV1A.0006s0290
Salix purpurea
SapurV1A.0006s0290
N
0.891
SapurV1A.0028s0510
Salix purpurea
SapurV1A.0028s0510
N
0.867
SapurV1A.0188s0290
Salix purpurea
SapurV1A.0188s0290
N
0.891
SapurV1A.0388s0180
Salix purpurea
SapurV1A.0388s0180
N
0.847
SapurV1A.0441s0120
Salix purpurea
SapurV1A.0441s0120
N
0.867
SapurV1A.0658s0070
Salix purpurea
SapurV1A.0658s0070
N
0.842
SapurV1A.0694s0030
Salix purpurea
SapurV1A.0694s0030
N
0.866
SapurV1A.1304s0050
Salix purpurea
SapurV1A.1304s0050
N
0.867
SapurV1A.2213s0020
Salix purpurea
SapurV1A.2213s0020
N
0.842
Thhalv10017421m.g
Eutrema salsugineum
Thhalv10017421m.g
N
0.846
Thhalv10020666m.g
Eutrema salsugineum
Thhalv10020666m.g
N
0.866
Thhalv10029319m.g
Eutrema salsugineum
Thhalv10029319m.g
N
0.902
PK14284.1
Cannabis sativa
PK14284.1
N
0.867
PK22680.1
Cannabis sativa
PK22680.1
N
0.866
chr5.CM0200.1030.nc
Lotus japonicus
chr5.CM0200.1030.nc
N
0.871
LjSGA_014369.1
Lotus japonicus
LjSGA_014369.1
N
0.867
LjSGA_021413.2
Lotus japonicus
LjSGA_021413.2
N
0.889
PDK_20s1457351g001
Phoenix dactylifera
PDK_20s1457351g001
N
0.867
PDK_20s1709901g001
Phoenix dactylifera
PDK_20s1709901g001
N
0.891