ENSLACG00000013163 (Latimeria chalumnae)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSLACG00000013163 T034839_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Bhlhe41
M01739_2.00 		Mus musculus
NMNCGTGMN
NKCACGNKN		 PBM
Weirauch et al.(2014)
pTH5060 		0.914 1.000
BHLHE41
M02782_2.00 		Homo sapiens
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
BHLHB3_1 		0.914 1.000
BHLHE41
M02783_2.00 		Homo sapiens
RKCACGTGAY
RTCACGTGMY		 SELEX
Jolma et al.(2013)
BHLHE41_1 		0.914 1.000
BHLHE41
M04106_2.00 		Homo sapiens
VTCACGTGAB
VTCACGTGAB		 SELEX
Yin et al.(2017)
BHLHE41_eDBD_HT-SELEX 		0.914 1.000
BHLHE41
M09833_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC2_Q2 		0.914 1.000
BHLHE41
M09834_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC2_Q3 		0.914 1.000
BHLHE41
M04107_2.00 		Homo sapiens
RTCACGTGAY
RTCACGTGAY		 SELEX
Yin et al.(2017)
BHLHE41_eDBD_Methyl-HT-SELEX 		0.914 1.000
Bhlhe40
M00119_2.00 		Mus musculus
DCACGTGMN
NKCACGTGH		 PBM
Badis et al.(2009)
Bhlhb2_1274 		0.914 0.981
Bhlhe40
M01738_2.00 		Mus musculus
NCACRNBN
NVNYGTGN		 PBM
Weirauch et al.(2014)
pTH4330 		0.914 0.981
BHLHE40
M02788_2.00 		Homo sapiens
NKCACGTGMH
DKCACGTGMN		 SELEX
Jolma et al.(2013)
BHLHB2_1 		0.914 0.981
Bhlhe40
M02817_2.00 		Mus musculus
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
Bhlhb2_1 		0.914 0.981
Bhlhe40
M02818_2.00 		Mus musculus
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
Bhlhb2_2 		0.914 0.981
BHLHE40
M04126_2.00 		Homo sapiens
VTCACGTGAB
VTCACGTGAB		 SELEX
Yin et al.(2017)
BHLHE40_eDBD_HT-SELEX 		0.914 0.981
BHLHE40
M07798_2.00 		Homo sapiens
DCACGTGMSN
NSKCACGTGH		 ChIP-seq
Gerstein et al.(2012)
HepG2_BHLHE40_HudsonAlpha 		0.914 0.981
BHLHE40
M08726_2.00 		Homo sapiens
DDCACGTGMS
SKCACGTGHH		 Misc
Kulakovskiy et al.(2013)
BHE40_HUMAN.H11MO.0.A 		0.914 0.981
Bhlhe40
M08761_2.00 		Mus musculus
DCACGTGMS
SKCACGTGH		 Misc
Kulakovskiy et al.(2013)
BHE40_MOUSE.H11MO.0.A 		0.914 0.981
BHLHE40
M09456_2.00 		Homo sapiens
DCACGTGMNN
NNKCACGTGH		 Misc
Heinz et al.(2010)
HepG2-BHLHE40_GSE31477 		0.914 0.981
BHLHE40
M09842_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BHLHE40_03 		0.914 0.981
BHLHE40
M09843_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC1_Q2 		0.914 0.981
BHLHE40
M09844_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC1_Q3 		0.914 0.981
BHLHE40
M09845_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$STRA13_01 		0.914 0.981
BHLHE40
M04127_2.00 		Homo sapiens
RTCACGTGAY
RTCACGTGAY		 SELEX
Yin et al.(2017)
BHLHE40_eDBD_Methyl-HT-SELEX 		0.914 0.981
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000014955 bHLH 46 100

Links

Other bHLH family TFs
Other Latimeria chalumnae TFs

117 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RKD2 Arabidopsis thaliana AT1G74480 D 0.000
Ca_13151 Cicer arietinum Ca_13151 I 0.000
Cagra.4153s0001 Capsella grandiflora Cagra.4153s0001 I 0.000
Cagra.0402s0077 Capsella grandiflora Cagra.0402s0077 I 0.000
Bostr.3288s0094 Boechera stricta Bostr.3288s0094 I 0.000
mgf022310m Mimulus guttatus mgf022310m I 0.000
mg020279m Mimulus guttatus mg020279m I 0.000
Cucsa.197700 Cucumis sativus Cucsa.197700 I 0.000
cassava35166.m1 Manihot esculenta cassava35166.m1 I 0.000
30138.m004071 Ricinus communis 30138.m004071 I 0.000
Pm024905 Prunus mume Pm024905 I 0.000
Ca_27191 Cicer arietinum Ca_27191 I 0.000
Carubv10011133m.g Capsella rubella Carubv10011133m.g I 0.000
VIT_17s0000g06250 Vitis vinifera VIT_17s0000g06250 I 0.000
TRIUR3_19503 Triticum urartu TRIUR3_19503 I 0.000
Traes_7DS_405F08A53 Triticum aestivum Traes_7DS_405F08A53 I 0.000
Traes_6BL_301505440 Triticum aestivum Traes_6BL_301505440 I 0.000
TCM_014009 Theobroma cacao TCM_014009 I 0.000
Solyc03g116010.1 Solanum lycopersicum Solyc03g116010.1 I 0.000
Si020172m.g Setaria italica Si020172m.g I 0.000
Si008273m.g Setaria italica Si008273m.g I 0.000
Lus10035008.g Linum usitatissimum Lus10035008.g I 0.000
PDK_20s1383532g001 Phoenix dactylifera PDK_20s1383532g001 I 0.000
chr4.CM0087.990.nc Lotus japonicus chr4.CM0087.990.nc I 0.000
Thhalv10019554m.g Eutrema salsugineum Thhalv10019554m.g I 0.000
Pavir.J13146 Panicum virgatum Pavir.J13146 I 0.000
Pavir.Da01160 Panicum virgatum Pavir.Da01160 I 0.000
Pavir.Ab02992 Panicum virgatum Pavir.Ab02992 I 0.000
orange1.1g036926m.g Citrus sinensis orange1.1g036926m.g I 0.000
MDP0000266172 Malus domestica MDP0000266172 I 0.000
MDP0000261199 Malus domestica MDP0000261199 I 0.000
RKD1 Arabidopsis thaliana AT1G18790 I 0.000
Lus10034456.g Linum usitatissimum Lus10034456.g I 0.000
Lus10019100.g Linum usitatissimum Lus10019100.g I 0.000
Gorai.008G193400 Gossypium raimondii Gorai.008G193400 I 0.000
Gorai.006G266900 Gossypium raimondii Gorai.006G266900 I 0.000
Genemark1.7281_g Coccomyxa subellipsoidea C169 Genemark1.7281_g I 0.000
gene26015-v1.0-hybrid Fragaria vesca gene26015-v1.0-hybrid I 0.000
evm.TU.supercontig_423.7 Carica papaya evm.TU.supercontig_423.7 I 0.000
Carubv10021541m.g Capsella rubella Carubv10021541m.g I 0.000
GLYMA04G33516 Glycine max GLYMA04G33516 I 0.000
Bo8g068090 Brassica oleracea Bo8g068090 I 0.000
Bra008153 Brassica rapa Bra008153 I 0.000
BGIOSGA022580 Oryza indica BGIOSGA022580 I 0.000
GRMZM2G392306 Zea mays GRMZM2G392306 I 0.000
GLYMA17G10866 Glycine max GLYMA17G10866 I 0.000
Bra012122 Brassica rapa Bra012122 I 0.000
GLYMA06G20881 Glycine max GLYMA06G20881 I 0.000
GLYMA05G01030 Glycine max GLYMA05G01030 I 0.000
LPERR06G07570 Leersia perrieri LPERR06G07570 I 0.000
fgenesh2_kg.1__2057__AT1G18790.1 Arabidopsis lyrata fgenesh2_kg.1__2057__AT1G18790.1 I 0.000
fgenesh1_pg.C_scaffold_8002648 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002648 I 0.000
fgenesh1_pg.C_scaffold_2001738 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001738 I 0.000
fgenesh1_pg.C_scaffold_2000886 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000886 I 0.000
F775_07483 Aegilops tauschii F775_07483 I 0.000
Bra016542 Brassica rapa Bra016542 I 0.000
Bra015907 Brassica rapa Bra015907 I 0.000
OPUNC02G29870 Oryza punctata OPUNC02G29870 I 0.000
Bo7g064180 Brassica oleracea Bo7g064180 I 0.000
scaffold_103100001.1 Arabidopsis lyrata scaffold_103100001.1 I 0.000
Sb10g008120 Sorghum bicolor Sb10g008120 I 0.000
PRUPE_ppa023107mg Prunus persica PRUPE_ppa023107mg I 0.000
OS06G0228950 Oryza sativa OS06G0228950 I 0.000
ORUFI06G08510 Oryza rufipogon ORUFI06G08510 I 0.000
ORGLA06G0077700 Oryza glaberrima ORGLA06G0077700 I 0.000
OPUNC06G07940 Oryza punctata OPUNC06G07940 I 0.000
ONIVA06G09450 Oryza nivara ONIVA06G09450 I 0.000
OMERI06G09770 Oryza meridionalis OMERI06G09770 I 0.000
OB06G17750 Oryza brachyantha OB06G17750 I 0.000
MTR_3g435550 Medicago truncatula MTR_3g435550 I 0.000
MLOC_59560 Hordeum vulgare MLOC_59560 I 0.000
MLOC_12609 Hordeum vulgare MLOC_12609 I 0.000
AMTR_s00057p00091350 Amborella trichopoda AMTR_s00057p00091350 I 0.000
RKD3 Arabidopsis thaliana AT5G66990 N 0.000
Thhalv10005560m.g Eutrema salsugineum Thhalv10005560m.g N 0.000
PDK_20s1788591g001 Phoenix dactylifera PDK_20s1788591g001 N 0.000
LjSGA_030914.1 Lotus japonicus LjSGA_030914.1 N 0.000
SELMODRAFT_73110 Selaginella moellendorffii SELMODRAFT_73110 N 0.000
Carubv10027579m.g Capsella rubella Carubv10027579m.g N 0.000
GSMUA_Achr4G08610_001 Musa acuminata GSMUA_Achr4G08610_001 N 0.000
Cagra.2007s0003 Capsella grandiflora Cagra.2007s0003 N 0.000
GSMUA_AchrUn_randomG11290_001 Musa acuminata GSMUA_AchrUn_randomG11290_001 N 0.000
Bostr.0568s0123 Boechera stricta Bostr.0568s0123 N 0.000
SELMODRAFT_73109 Selaginella moellendorffii SELMODRAFT_73109 N 0.000