ATF3 (Ochotona princeps)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00170 (bZIP_1) IPR011616 ENSOPRG00000013252 T060839_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Atf3
M00758_2.00 		Mus musculus
NNRTKAYNN
NNRTMAYNN		 PBM
Weirauch et al.(2013)
pTH2684 		0.929 0.984
Atf3
M01807_2.00 		Mus musculus
GATGACGY
RCGTCATC		 PBM
Weirauch et al.(2014)
pTH5018 		0.929 0.984
Atf3
M08825_2.00 		Mus musculus
VTGACTCAB
VTGAGTCAB		 Misc
Kulakovskiy et al.(2013)
ATF3_MOUSE.H11MO.0.A 		0.929 0.984
JDP2
M02836_2.00 		Homo sapiens
ATGASTCAT
ATGASTCAT		 SELEX
Jolma et al.(2013)
JDP2_1 		0.881 0.742
JDP2
M02837_2.00 		Homo sapiens
NRTGACGTCATB
VATGACGTCAYN		 SELEX
Jolma et al.(2013)
JDP2_2 		0.881 0.742
JDP2
M02838_2.00 		Homo sapiens
ATGASTCAT
ATGASTCAT		 SELEX
Jolma et al.(2013)
JDP2_3 		0.881 0.742
JDP2
M02839_2.00 		Homo sapiens
NRTGACGTCATN
NATGACGTCAYN		 SELEX
Jolma et al.(2013)
JDP2_4 		0.881 0.742
JDP2
M04285_2.00 		Homo sapiens
NATGASTCATV
BATGASTCATN		 SELEX
Yin et al.(2017)
JDP2_eDBD_HT-SELEX_1 		0.881 0.742
JDP2
M04286_2.00 		Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN		 SELEX
Yin et al.(2017)
JDP2_eDBD_HT-SELEX_2 		0.881 0.742
JDP2
M04289_2.00 		Homo sapiens
NRTGMSKCAYN
NRTGMSKCAYN		 SELEX
Yin et al.(2017)
JDP2_FL_HT-SELEX_1 		0.881 0.742
JDP2
M04290_2.00 		Homo sapiens
NRTKACRTMAYN
NRTKAYGTMAYN		 SELEX
Yin et al.(2017)
JDP2_FL_HT-SELEX_2 		0.881 0.742
JDP2
M04287_2.00 		Homo sapiens
BATGASTCAYN
NRTGASTCATV		 SELEX
Yin et al.(2017)
JDP2_eDBD_Methyl-HT-SELEX_1 		0.881 0.742
JDP2
M04288_2.00 		Homo sapiens
NRTGACRTCAYN
NRTGAYGTCAYN		 SELEX
Yin et al.(2017)
JDP2_eDBD_Methyl-HT-SELEX_2 		0.881 0.742
JDP2
M04291_2.00 		Homo sapiens
NRTGASTCAYN
NRTGASTCAYN		 SELEX
Yin et al.(2017)
JDP2_FL_Methyl-HT-SELEX_1 		0.881 0.742
JDP2
M04292_2.00 		Homo sapiens
NVTKACRTCAYN
NRTGAYGTMABN		 SELEX
Yin et al.(2017)
JDP2_FL_Methyl-HT-SELEX_2 		0.881 0.742
Jdp2
M00125_2.00 		Mus musculus
NRTGAYDNNN
NNNHRTCAYN		 PBM
Badis et al.(2009)
Jundm2_0911 		0.879 0.742
Jdp2
M01810_2.00 		Mus musculus
NNTGACGYMW
WKRCGTCANN		 PBM
Weirauch et al.(2014)
pTH5464 		0.879 0.742
Jdp2
M02861_2.00 		Mus musculus
ATGASTCAT
ATGASTCAT		 SELEX
Jolma et al.(2013)
Jdp2_1 		0.879 0.742
Jdp2
M02862_2.00 		Mus musculus
VATGACGTCAYN
NRTGACGTCATB		 SELEX
Jolma et al.(2013)
Jdp2_2 		0.879 0.742
Jdp2
M10033_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$JDP2_03 		0.879 0.742
ATF3
M04321_2.00 		Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN		 SELEX
Yin et al.(2017)
ATF3_eDBD_HT-SELEX 		0.823 0.532
ATF3
M04323_2.00 		Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN		 SELEX
Yin et al.(2017)
ATF3_FL_HT-SELEX 		0.823 0.532
ATF3
M04032_2.00 		Homo sapiens
RTGACGTCAK
MTGACGTCAY		 SELEX
Rodriguez-Martinez et al.(2017)
ATF3.1 		0.823 0.532
ATF3
M04033_2.00 		Homo sapiens
RTGACTCAY
RTGAGTCAY		 SELEX
Rodriguez-Martinez et al.(2017)
ATF3.2 		0.823 0.532
ATF3
M07822_2.00 		Homo sapiens
VGTCACGTGRB
VYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
GM12878_ATF3_HudsonAlpha 		0.823 0.532
ATF3
M07823_2.00 		Homo sapiens
VGTCACGTGRB
VYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_ATF3_HudsonAlpha 		0.823 0.532
ATF3
M07824_2.00 		Homo sapiens
VGTCACGTGRB
VYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
HepG2_ATF3_HudsonAlpha 		0.823 0.532
ATF3
M07825_2.00 		Homo sapiens
VRTSACGTVR
YBACGTSAYB		 ChIP-seq
Gerstein et al.(2012)
K562_ATF3_Harvard 		0.823 0.532
ATF3
M08187_2.00 		Homo sapiens
GTCACGTG
CACGTGAC		 ChIP-seq
Contrino et al.(2012)
Mv41 		0.823 0.532
ATF3
M08188_2.00 		Homo sapiens
NRTGASTCAY
RTGASTCAYN		 ChIP-seq
Contrino et al.(2012)
Mv43 		0.823 0.532
ATF3
M08801_2.00 		Homo sapiens
RRTSACGTVRB
VYBACGTSAYY		 Misc
Kulakovskiy et al.(2013)
ATF3_HUMAN.H11MO.0.A 		0.823 0.532
ATF3
M09489_2.00 		Homo sapiens
NVTGASTCABNN
NNVTGASTCABN		 Misc
Heinz et al.(2010)
GBM-ATF3_GSE33912 		0.823 0.532
ATF3
M09977_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ATF3_02 		0.823 0.532
ATF3
M09978_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ATF3_05 		0.823 0.532
ATF3
M09979_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ATF3_Q6_01 		0.823 0.532
ATF3
M09980_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ATF3_Q6_02 		0.823 0.532
ATF3
M09981_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ATF3_Q6 		0.823 0.532
ATF3
M04322_2.00 		Homo sapiens
NRTGACRTCAYH
DRTGAYGTCAYN		 SELEX
Yin et al.(2017)
ATF3_eDBD_Methyl-HT-SELEX 		0.823 0.532
ATF3
M04324_2.00 		Homo sapiens
NRTGACRTCAYH
DRTGAYGTCAYN		 SELEX
Yin et al.(2017)
ATF3_FL_Methyl-HT-SELEX 		0.823 0.532
Atf3
M03648_2.00 		Drosophila melanogaster
NRTKACGTMAYN
NRTKACGTMAYN		 SELEX
Nitta et al.(2015)
Atf3_1 		0.789 0.565
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOPRP00000012082 bZIP 84 145

Links

Other bZIP family TFs
Other Ochotona princeps TFs

171 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava25218.valid.m1 Manihot esculenta cassava25218.valid.m1 N
Ciclev10011085m.g Citrus clementina Ciclev10011085m.g N
Carubv10016802m.g Capsella rubella Carubv10016802m.g N
Cagra.0562s0013 Capsella grandiflora Cagra.0562s0013 N
Bostr.0697s0034 Boechera stricta Bostr.0697s0034 N
Aquca_004_00566 Aquilegia coerulea Aquca_004_00566 N
mgf012242m Mimulus guttatus mgf012242m N
Cucsa.002880 Cucumis sativus Cucsa.002880 N
cassava36326.valid.m1 Manihot esculenta cassava36326.valid.m1 N
Eucgr.K01320 Eucalyptus grandis Eucgr.K01320 N
30073.m002204 Ricinus communis 30073.m002204 N
Pm002956 Prunus mume Pm002956 N
Cla012346 Citrullus lanatus Cla012346 N
Ca_09530 Cicer arietinum Ca_09530 N
SCR Vitis vinifera VIT_08s0056g00050 N
Traes_5BL_C02570726 Triticum aestivum Traes_5BL_C02570726 N
Traes_4DS_2CE9E3235 Triticum aestivum Traes_4DS_2CE9E3235 N
TCM_017746 Theobroma cacao TCM_017746 N
orange1.1g014896m.g Citrus sinensis orange1.1g014896m.g N
chr1.CM1255.400.nc Lotus japonicus chr1.CM1255.400.nc N
PK22310.1 Cannabis sativa PK22310.1 N
Thhalv10010179m.g Eutrema salsugineum Thhalv10010179m.g N
SapurV1A.1165s0100 Salix purpurea SapurV1A.1165s0100 N
SapurV1A.0208s0090 Salix purpurea SapurV1A.0208s0090 N
Pavir.J21588 Panicum virgatum Pavir.J21588 N
Pavir.J08573 Panicum virgatum Pavir.J08573 N
Pavir.Ha01915 Panicum virgatum Pavir.Ha01915 N
Solyc10g074680.1 Solanum lycopersicum Solyc10g074680.1 N
MDP0000397638 Malus domestica MDP0000397638 N
Lus10040734.g Linum usitatissimum Lus10040734.g N
Lus10016496.g Linum usitatissimum Lus10016496.g N
Gorai.006G236200 Gossypium raimondii Gorai.006G236200 N
Gorai.005G001300 Gossypium raimondii Gorai.005G001300 N
gene13644-v1.0-hybrid Fragaria vesca gene13644-v1.0-hybrid N
evm.TU.supercontig_1018.1 Carica papaya evm.TU.supercontig_1018.1 N
GRMZM2G015080 Zea mays GRMZM2G015080 N
OBART11G01460 Oryza barthii OBART11G01460 N
OB07G24850 Oryza brachyantha OB07G24850 N
MTR_7g074650 Medicago truncatula MTR_7g074650 N
MLOC_64716 Hordeum vulgare MLOC_64716 N
LPERR12G01340 Leersia perrieri LPERR12G01340 N
LPERR11G01220 Leersia perrieri LPERR11G01220 N
GSMUA_Achr8G09400_001 Musa acuminata GSMUA_Achr8G09400_001 N
GRMZM2G131516 Zea mays GRMZM2G131516 N
OBART12G01190 Oryza barthii OBART12G01190 N
GLYMA18G45220 Glycine max GLYMA18G45220 N
GLYMA09G40620 Glycine max GLYMA09G40620 N
SCR Arabidopsis lyrata fgenesh2_kg.5__1811__AT3G54220.1 N
F775_14336 Aegilops tauschii F775_14336 N
Bo8g083500 Brassica oleracea Bo8g083500 N
BGIOSGA036912 Oryza indica BGIOSGA036912 N
BGIOSGA034703 Oryza indica BGIOSGA034703 N
SCR Arabidopsis thaliana AT3G54220 N
OS07G0567700 Oryza sativa OS07G0567700 N
SELMODRAFT_432115 Selaginella moellendorffii SELMODRAFT_432115 N
Sb05g001500 Sorghum bicolor Sb05g001500 N
PRUPE_ppa001546mg Prunus persica PRUPE_ppa001546mg N
POPTR_0016s15060 Populus trichocarpa POPTR_0016s15060 N
POPTR_0006s11500 Populus trichocarpa POPTR_0006s11500 N
PGSC0003DMG400016833 Solanum tuberosum PGSC0003DMG400016833 N
SCR2 Oryza sativa OS12G0122000 N
SCR1 Oryza sativa OS11G0124300 N
AMTR_s00077p00190160 Amborella trichopoda AMTR_s00077p00190160 N
ORUFI12G01460 Oryza rufipogon ORUFI12G01460 N
ORUFI11G01380 Oryza rufipogon ORUFI11G01380 N
ORGLA12G0010300 Oryza glaberrima ORGLA12G0010300 N
ORGLA11G0013300 Oryza glaberrima ORGLA11G0013300 N
OMERI06G09050 Oryza meridionalis OMERI06G09050 N
OLONG_010321 Oryza longistaminata OLONG_010321 N
OGLUM11G01180 Oryza glumaepatula OGLUM11G01180 N