SNAI1 (Loxodonta africana)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSLAFG00000030265 T097490_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Snai1
M00781_2.00 		Mus musculus
NNNTGTCANN
NNTGACANNN		 PBM
Weirauch et al.(2013)
pTH2340 		0.807 0.901
Snai1
M09002_2.00 		Mus musculus
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_MOUSE.H11MO.0.C 		0.807 0.901
SNAI1
M04441_2.00 		Homo sapiens
NVCACCTGYN
NRCAGGTGBN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_HT-SELEX 		0.805 0.901
SNAI1
M04443_2.00 		Homo sapiens
TRCACCTGYN
NRCAGGTGYA		 SELEX
Yin et al.(2017)
SNAI1_FL_HT-SELEX 		0.805 0.901
SNAI1
M08303_2.00 		Homo sapiens
NNNNGCACCTGCYNB
VNRGCAGGTGCNNNN		 ChIP-seq
Schmitges et al.(2016)
O95863.MEME 		0.805 0.901
SNAI1
M08886_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_HUMAN.H11MO.0.C 		0.805 0.901
SNAI1
M10201_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q4 		0.805 0.901
SNAI1
M10202_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q6 		0.805 0.901
SNAI1
M04442_2.00 		Homo sapiens
NRCACCTGYN
NRCAGGTGYN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_Methyl-HT-SELEX 		0.805 0.901
SNAI1
M04444_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI1_FL_Methyl-HT-SELEX 		0.805 0.901
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000028752 C2H2 ZF 154 176
ENSLAFP00000028752 C2H2 ZF 180 202
ENSLAFP00000028752 C2H2 ZF 208 230
ENSLAFP00000028752 C2H2 ZF 236 257

Links

Other C2H2 ZF family TFs
Other Loxodonta africana TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA02G36090 Glycine max GLYMA02G36090 I
GLYMA10G08871 Glycine max GLYMA10G08871 I
GSMUA_Achr9G02600_001 Musa acuminata GSMUA_Achr9G02600_001 I
OPUNC04G20430 Oryza punctata OPUNC04G20430 I
PRUPE_ppa019539mg Prunus persica PRUPE_ppa019539mg I
Traes_1BL_53C31B54B Triticum aestivum Traes_1BL_53C31B54B I
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I
TRIUR3_24950 Triticum urartu TRIUR3_24950 I
Ca_25633 Cicer arietinum Ca_25633 I
Cla017937 Citrullus lanatus Cla017937 I
Cucsa.241440 Cucumis sativus Cucsa.241440 I
Aquca_072_00063 Aquilegia coerulea Aquca_072_00063 I
Ciclev10012008m.g Citrus clementina Ciclev10012008m.g I
evm.TU.contig_29173.1 Carica papaya evm.TU.contig_29173.1 I
gene15627-v1.0-hybrid Fragaria vesca gene15627-v1.0-hybrid I
orange1.1g019261m.g Citrus sinensis orange1.1g019261m.g I
SapurV1A.0666s0090 Salix purpurea SapurV1A.0666s0090 I
PK04952.1 Cannabis sativa PK04952.1 I
ARF31 Arabidopsis thaliana AT2G36080 N
BGIOSGA031489 Oryza indica BGIOSGA031489 N
BGIOSGA034469 Oryza indica BGIOSGA034469 N
BGIOSGA036599 Oryza indica BGIOSGA036599 N
Bo01079s020 Brassica oleracea Bo01079s020 N
Bo4g035110 Brassica oleracea Bo4g035110 N
Bra005301 Brassica rapa Bra005301 N
Bra017262 Brassica rapa Bra017262 N
BRADI4G25170 Brachypodium distachyon BRADI4G25170 N
BRADI4G42167 Brachypodium distachyon BRADI4G42167 N
F775_02500 Aegilops tauschii F775_02500 N
F775_31255 Aegilops tauschii F775_31255 N
GLYMA03G35700 Glycine max GLYMA03G35700 N
GRMZM2G082227 Zea mays GRMZM2G082227 N
GRMZM2G142999 Zea mays GRMZM2G142999 N
GRMZM2G328742 Zea mays GRMZM2G328742 N
GRMZM5G805685 Zea mays GRMZM5G805685 N
GSMUA_Achr3G19210_001 Musa acuminata GSMUA_Achr3G19210_001 N
GSMUA_Achr6G13140_001 Musa acuminata GSMUA_Achr6G13140_001 N
GSMUA_Achr6G35600_001 Musa acuminata GSMUA_Achr6G35600_001 N
LPERR12G03290 Leersia perrieri LPERR12G03290 N
MLOC_11014 Hordeum vulgare MLOC_11014 N
MLOC_48938 Hordeum vulgare MLOC_48938 N
MLOC_56530 Hordeum vulgare MLOC_56530 N
MTR_1g058350 Medicago truncatula MTR_1g058350 N
MTR_7g105370 Medicago truncatula MTR_7g105370 N
OB10G24100 Oryza brachyantha OB10G24100 N
OB11G12920 Oryza brachyantha OB11G12920 N
OB12G13420 Oryza brachyantha OB12G13420 N
OBART10G17010 Oryza barthii OBART10G17010 N
OBART11G03590 Oryza barthii OBART11G03590 N
OBART12G03490 Oryza barthii OBART12G03490 N
OGLUM10G17040 Oryza glumaepatula OGLUM10G17040 N
OGLUM11G03240 Oryza glumaepatula OGLUM11G03240 N
OGLUM12G04180 Oryza glumaepatula OGLUM12G04180 N
OLONG_005139 Oryza longistaminata OLONG_005139 N
OMERI10G13480 Oryza meridionalis OMERI10G13480 N
OMERI11G03310 Oryza meridionalis OMERI11G03310 N
OMERI12G01740 Oryza meridionalis OMERI12G01740 N
ONIVA07G22860 Oryza nivara ONIVA07G22860 N
ONIVA10G18740 Oryza nivara ONIVA10G18740 N
ONIVA12G03130 Oryza nivara ONIVA12G03130 N
OPUNC10G16940 Oryza punctata OPUNC10G16940 N
OPUNC11G03320 Oryza punctata OPUNC11G03320 N
OPUNC12G03300 Oryza punctata OPUNC12G03300 N
ORGLA10G0119700 Oryza glaberrima ORGLA10G0119700 N
ORGLA11G0033600 Oryza glaberrima ORGLA11G0033600 N
ORGLA12G0033700 Oryza glaberrima ORGLA12G0033700 N
ORUFI10G18030 Oryza rufipogon ORUFI10G18030 N
ORUFI11G03500 Oryza rufipogon ORUFI11G03500 N
ORUFI12G03970 Oryza rufipogon ORUFI12G03970 N
OS10G0537100 Oryza sativa OS10G0537100 N
OS11G0156000 Oryza sativa OS11G0156000 N
PGSC0003DMG400008936 Solanum tuberosum PGSC0003DMG400008936 N
POPTR_0006s22460 Populus trichocarpa POPTR_0006s22460 N
POPTR_0016s07540 Populus trichocarpa POPTR_0016s07540 N
PRUPE_ppa015999mg Prunus persica PRUPE_ppa015999mg N
Sb01g030520 Sorghum bicolor Sb01g030520 N
Sb05g003450 Sorghum bicolor Sb05g003450 N
Sb08g003550 Sorghum bicolor Sb08g003550 N
scaffold_402221.1 Arabidopsis lyrata scaffold_402221.1 N
SELMODRAFT_59317 Selaginella moellendorffii SELMODRAFT_59317 N
Si010849m.g Setaria italica Si010849m.g N
Si027632m.g Setaria italica Si027632m.g N
Solyc09g010230.1 Solanum lycopersicum Solyc09g010230.1 N
TCM_022729 Theobroma cacao TCM_022729 N
Traes_2AL_25382F498 Triticum aestivum Traes_2AL_25382F498 N
Traes_2BL_5ECD53274 Triticum aestivum Traes_2BL_5ECD53274 N
Traes_2DL_2128A95BD Triticum aestivum Traes_2DL_2128A95BD N
Traes_4AL_4F2E6EF28 Triticum aestivum Traes_4AL_4F2E6EF28 N
Traes_4BL_D9784B20C1 Triticum aestivum Traes_4BL_D9784B20C1 N
Traes_4BS_5FECB39FA Triticum aestivum Traes_4BS_5FECB39FA N
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N
Traes_4DS_E6210A614 Triticum aestivum Traes_4DS_E6210A614 N
Traes_5BL_B98E347A8 Triticum aestivum Traes_5BL_B98E347A8 N
Traes_5DL_CACDF70D6 Triticum aestivum Traes_5DL_CACDF70D6 N
VIT_08s0007g02810 Vitis vinifera VIT_08s0007g02810 N
Ca_00826 Cicer arietinum Ca_00826 N
Pm028725 Prunus mume Pm028725 N
30032.m000462 Ricinus communis 30032.m000462 N
cassava19218.valid.m1 Manihot esculenta cassava19218.valid.m1 N
cassava3990.m1 Manihot esculenta cassava3990.m1 N
Bostr.23794s0488 Boechera stricta Bostr.23794s0488 N
Cagra.0993s0119 Capsella grandiflora Cagra.0993s0119 N
Carubv10023925m.g Capsella rubella Carubv10023925m.g N
Eucgr.A02625 Eucalyptus grandis Eucgr.A02625 N
Gorai.006G152400 Gossypium raimondii Gorai.006G152400 N
Gorai.009G399000 Gossypium raimondii Gorai.009G399000 N
Lus10004226.g Linum usitatissimum Lus10004226.g N
Lus10021326.g Linum usitatissimum Lus10021326.g N
MDP0000229742 Malus domestica MDP0000229742 N
MDP0000288808 Malus domestica MDP0000288808 N
Pavir.Ca00165 Panicum virgatum Pavir.Ca00165 N
Pavir.Cb02052 Panicum virgatum Pavir.Cb02052 N
Pavir.Ha01761 Panicum virgatum Pavir.Ha01761 N
Pavir.Hb01814 Panicum virgatum Pavir.Hb01814 N
SapurV1A.0974s0140 Salix purpurea SapurV1A.0974s0140 N
SapurV1A.1211s0020 Salix purpurea SapurV1A.1211s0020 N
SapurV1A.1586s0010 Salix purpurea SapurV1A.1586s0010 N
Thhalv10017156m.g Eutrema salsugineum Thhalv10017156m.g N