D917_07949 (Trichinella nativa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 D917_07949 T152894_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
D917_07949 C2H2 ZF 492 513
D917_07949 C2H2 ZF 519 541
D917_07949 C2H2 ZF 551 573
D917_07949 C2H2 ZF 689 711
D917_07949 C2H2 ZF 717 739
D917_07949 C2H2 ZF 843 865
D917_07949 C2H2 ZF 871 893

Links

Other C2H2 ZF family TFs
Other Trichinella nativa TFs

1 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10015798m.g Capsella rubella Carubv10015798m.g I
29727.m000472 Ricinus communis 29727.m000472 I
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I
cassava34877.m1 Manihot esculenta cassava34877.m1 I
cassava47424.m1 Manihot esculenta cassava47424.m1 I
Cucsa.359990 Cucumis sativus Cucsa.359990 I
Aquca_020_00550 Aquilegia coerulea Aquca_020_00550 I
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I
Bostr.28625s0284 Boechera stricta Bostr.28625s0284 I
Bostr.7128s0077 Boechera stricta Bostr.7128s0077 I
Cagra.0769s0020 Capsella grandiflora Cagra.0769s0020 I
Cagra.3631s0002 Capsella grandiflora Cagra.3631s0002 I
Carubv10009310m.g Capsella rubella Carubv10009310m.g I
cassava116.valid.m1 Manihot esculenta cassava116.valid.m1 I
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I
MDP0000255104 Malus domestica MDP0000255104 I
MDP0000281471 Malus domestica MDP0000281471 I
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I
Thhalv10011582m.g Eutrema salsugineum Thhalv10011582m.g I
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I
Cla015773 Citrullus lanatus Cla015773 I
GLYMA07G04790 Glycine max GLYMA07G04790 I
GLYMA16G01370 Glycine max GLYMA16G01370 I
ASIL1 Arabidopsis lyrata fgenesh2_kg.1__4489__AT1G54060.1 I
GSMUA_Achr3G05880_001 Musa acuminata GSMUA_Achr3G05880_001 I
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I
fgenesh1_pg.C_scaffold_3001317 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001317 I
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I
MTR_8g022290 Medicago truncatula MTR_8g022290 I
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I
PGSC0003DMG400037972 Solanum tuberosum PGSC0003DMG400037972 I
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I
PRUPE_ppa010427mg Prunus persica PRUPE_ppa010427mg I
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I
Solyc03g122030.1 Solanum lycopersicum Solyc03g122030.1 I
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I
TCM_029209 Theobroma cacao TCM_029209 I
AMTR_s00021p00065350 Amborella trichopoda AMTR_s00021p00065350 I
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I
Pm013209 Prunus mume Pm013209 I
SapurV1A.2810s0010 Salix purpurea SapurV1A.2810s0010 N
SapurV1A.0504s0110 Salix purpurea SapurV1A.0504s0110 N
AMTR_s00007p00263040 Amborella trichopoda AMTR_s00007p00263040 N
MDP0000943251 Malus domestica MDP0000943251 N
MDP0000097759 Malus domestica MDP0000097759 N
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N
GSMUA_Achr9G14340_001 Musa acuminata GSMUA_Achr9G14340_001 N
POPTR_0001s06330 Populus trichocarpa POPTR_0001s06330 N
TCM_042467 Theobroma cacao TCM_042467 N
VIT_09s0002g00720 Vitis vinifera VIT_09s0002g00720 N