tfcp2 (Danio rerio)
Grainyhead

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04516 (CP2) IPR007604 ENSDARG00000060306 T198954_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ENSGALG00000002235
M02030_2.00 		Gallus gallus
AACCGGTTA
TAACCGGTT		 PBM
Weirauch et al.(2014)
pTH8565 		0.924 0.924
TFCP2L1
M04885_2.00 		Homo sapiens
DCYRGHHNNNDCYRGH
DCYRGHNNNDDCYRGH		 SELEX
Yin et al.(2017)
TFCP2L1_eDBD_HT-SELEX 		0.810 0.810
TFCP2L1
M10609_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LBP9_01 		0.810 0.810
TFCP2L1
M04886_2.00 		Homo sapiens
DCYRGHHNNDDCYRGH
DCYRGHHNNDDCYRGH		 SELEX
Yin et al.(2017)
TFCP2L1_eDBD_Methyl-HT-SELEX 		0.810 0.810
UBP1
M04893_2.00 		Homo sapiens
NDCYRGHNNNNDCYRGHN
NDCYRGHNNNNDCYRGHN		 SELEX
Yin et al.(2017)
UBP1_eDBD_HT-SELEX 		0.796 0.796
UBP1
M10614_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LBP1_Q6_01 		0.796 0.796
UBP1
M10615_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LBP1_Q6 		0.796 0.796
UBP1
M04894_2.00 		Homo sapiens
DWCYRGHHNNDDCYRGWH
DWCYRGHHNNDDCYRGWH		 SELEX
Yin et al.(2017)
UBP1_eDBD_Methyl-HT-SELEX 		0.796 0.796
Tcfcp2l1
M08029_2.00 		Mus musculus
CYRGYYYHDDCYRGHYYNNNN
NNNNRRDCYRGHHDRRRCYRG		 ChIP-seq
Chen et al.(2011)
SRP000217_Tcfc2pI1 		0.791 0.791
Tcfcp2l1
M08030_2.00 		Mus musculus
CYRGYYYHDDCYRGHYYNNNN
NNNNRRDCYRGHHDRRRCYRG		 ChIP-seq
Chen et al.(2011)
SRP000217_Tcfcp2I1 		0.791 0.791
Tcfcp2l1
M09127_2.00 		Mus musculus
DDCYRGYTYHNDCYRGHYB
VRDCYRGHNDRARCYRGHH		 Misc
Kulakovskiy et al.(2013)
TF2L1_MOUSE.H11MO.0.C 		0.791 0.791
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000121618 Grainyhead 45 260

Links

Other Grainyhead family TFs
Other Danio rerio TFs

190 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.005G204800 Gossypium raimondii Gorai.005G204800 N
Cla007849 Citrullus lanatus Cla007849 N
Pm015354 Prunus mume Pm015354 N
29983.m003255 Ricinus communis 29983.m003255 N
cassava12533.valid.m1 Manihot esculenta cassava12533.valid.m1 N
cassava18740.valid.m1 Manihot esculenta cassava18740.valid.m1 N
Cucsa.147930 Cucumis sativus Cucsa.147930 N
Aquca_008_00040 Aquilegia coerulea Aquca_008_00040 N
Aquca_102_00032 Aquilegia coerulea Aquca_102_00032 N
Eucgr.K00939 Eucalyptus grandis Eucgr.K00939 N
evm.TU.supercontig_34.111 Carica papaya evm.TU.supercontig_34.111 N
gene10278-v1.0-hybrid Fragaria vesca gene10278-v1.0-hybrid N
Ca_19014 Cicer arietinum Ca_19014 N
Gorai.008G152400 Gossypium raimondii Gorai.008G152400 N
Lus10039791.g Linum usitatissimum Lus10039791.g N
MDP0000089136 Malus domestica MDP0000089136 N
MDP0000237588 Malus domestica MDP0000237588 N
MDP0000315130 Malus domestica MDP0000315130 N
Pavir.Eb03405 Panicum virgatum Pavir.Eb03405 N
SapurV1A.0048s0510 Salix purpurea SapurV1A.0048s0510 N
SapurV1A.0492s0170 Salix purpurea SapurV1A.0492s0170 N
SapurV1A.2807s0020 Salix purpurea SapurV1A.2807s0020 N
PK16281.1 Cannabis sativa PK16281.1 N
ONIVA01G37460 Oryza nivara ONIVA01G37460 N
GRMZM2G004690 Zea mays GRMZM2G004690 N
GRMZM2G082745 Zea mays GRMZM2G082745 N
GSMUA_Achr1G08820_001 Musa acuminata GSMUA_Achr1G08820_001 N
GSMUA_Achr2G02900_001 Musa acuminata GSMUA_Achr2G02900_001 N
GSMUA_AchrUn_randomG13850_001 Musa acuminata GSMUA_AchrUn_randomG13850_001 N
LPERR01G28620 Leersia perrieri LPERR01G28620 N
OB01G42000 Oryza brachyantha OB01G42000 N
OBART01G33150 Oryza barthii OBART01G33150 N
OGLUM01G37340 Oryza glumaepatula OGLUM01G37340 N
OLONG_014986 Oryza longistaminata OLONG_014986 N
OMERI01G30050 Oryza meridionalis OMERI01G30050 N
BGIOSGA000702 Oryza indica BGIOSGA000702 N
ORGLA01G0271200 Oryza glaberrima ORGLA01G0271200 N
ORUFI01G36290 Oryza rufipogon ORUFI01G36290 N
OS01G0780800 Oryza sativa OS01G0780800 N
POPTR_0013s14170 Populus trichocarpa POPTR_0013s14170 N
POPTR_0019s13550 Populus trichocarpa POPTR_0019s13550 N
PRUPE_ppa017439mg Prunus persica PRUPE_ppa017439mg N
Sb03g036430 Sorghum bicolor Sb03g036430 N
Si002762m.g Setaria italica Si002762m.g N
TCM_007971 Theobroma cacao TCM_007971 N
VIT_12s0059g01980 Vitis vinifera VIT_12s0059g01980 N