Pavir.J08573 (Panicum virgatum)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03514 (GRAS) IPR005202 Pavir.J08573 T203047_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J08573.1.p GRAS 231 592

Links

Other GRAS family TFs
Other Panicum virgatum TFs

60 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10016802m.g Capsella rubella Carubv10016802m.g N 0.753
Traes_4DS_2CE9E3235 Triticum aestivum Traes_4DS_2CE9E3235 N 0.870
Traes_5BL_C02570726 Triticum aestivum Traes_5BL_C02570726 N 0.881
SCR Vitis vinifera VIT_08s0056g00050 N 0.787
Ca_09530 Cicer arietinum Ca_09530 N 0.773
Cla012346 Citrullus lanatus Cla012346 N 0.765
Pm002956 Prunus mume Pm002956 N 0.781
30073.m002204 Ricinus communis 30073.m002204 N 0.773
cassava25218.valid.m1 Manihot esculenta cassava25218.valid.m1 N 0.788
cassava36326.valid.m1 Manihot esculenta cassava36326.valid.m1 N 0.778
Cucsa.002880 Cucumis sativus Cucsa.002880 N 0.762
mgf012242m Mimulus guttatus mgf012242m N 0.759
Aquca_004_00566 Aquilegia coerulea Aquca_004_00566 N 0.773
Bostr.0697s0034 Boechera stricta Bostr.0697s0034 N 0.753
Cagra.0562s0013 Capsella grandiflora Cagra.0562s0013 N 0.753
Traes_4BS_A05D3DC53 Triticum aestivum Traes_4BS_A05D3DC53 N 0.867
Ciclev10011085m.g Citrus clementina Ciclev10011085m.g N 0.776
Eucgr.K01320 Eucalyptus grandis Eucgr.K01320 N 0.765
evm.TU.supercontig_1018.1 Carica papaya evm.TU.supercontig_1018.1 N 0.770
gene13644-v1.0-hybrid Fragaria vesca gene13644-v1.0-hybrid N 0.773
Gorai.005G001300 Gossypium raimondii Gorai.005G001300 N 0.729
Gorai.006G236200 Gossypium raimondii Gorai.006G236200 N 0.759
Lus10016496.g Linum usitatissimum Lus10016496.g N 0.712
Lus10040734.g Linum usitatissimum Lus10040734.g N 0.712
MDP0000397638 Malus domestica MDP0000397638 N 0.776
orange1.1g014896m.g Citrus sinensis orange1.1g014896m.g N 0.776
SapurV1A.0208s0090 Salix purpurea SapurV1A.0208s0090 N 0.776
SapurV1A.1165s0100 Salix purpurea SapurV1A.1165s0100 N 0.747
Thhalv10010179m.g Eutrema salsugineum Thhalv10010179m.g N 0.756
chr1.CM1255.400.nc Lotus japonicus chr1.CM1255.400.nc N 0.781
OBART11G01460 Oryza barthii OBART11G01460 N 0.906
SCR Arabidopsis thaliana AT3G54220 N 0.753
BGIOSGA034703 Oryza indica BGIOSGA034703 N 0.922
BGIOSGA036912 Oryza indica BGIOSGA036912 N 0.917
Bo8g083500 Brassica oleracea Bo8g083500 N 0.753
SCR Arabidopsis lyrata fgenesh2_kg.5__1811__AT3G54220.1 N 0.753
GLYMA09G40620 Glycine max GLYMA09G40620 N 0.776
GLYMA18G45220 Glycine max GLYMA18G45220 N 0.776
GRMZM2G015080 Zea mays GRMZM2G015080 N 0.928
GRMZM2G131516 Zea mays GRMZM2G131516 N 0.945
GSMUA_Achr8G09400_001 Musa acuminata GSMUA_Achr8G09400_001 N 0.803
LPERR11G01220 Leersia perrieri LPERR11G01220 N 0.906
LPERR12G01340 Leersia perrieri LPERR12G01340 N 0.914
MLOC_64716 Hordeum vulgare MLOC_64716 N 0.870
MTR_7g074650 Medicago truncatula MTR_7g074650 N 0.770
AMTR_s00077p00190160 Amborella trichopoda AMTR_s00077p00190160 N 0.756
OBART12G01190 Oryza barthii OBART12G01190 N 0.801
OGLUM11G01180 Oryza glumaepatula OGLUM11G01180 N 0.801
OLONG_010321 Oryza longistaminata OLONG_010321 N 0.795
ORUFI11G01380 Oryza rufipogon ORUFI11G01380 N 0.895
ORUFI12G01460 Oryza rufipogon ORUFI12G01460 N 0.917
SCR1 Oryza sativa OS11G0124300 N 0.922
SCR2 Oryza sativa OS12G0122000 N 0.917
PGSC0003DMG400016833 Solanum tuberosum PGSC0003DMG400016833 N 0.765
POPTR_0006s11500 Populus trichocarpa POPTR_0006s11500 N 0.777
POPTR_0016s15060 Populus trichocarpa POPTR_0016s15060 N 0.778
PRUPE_ppa001546mg Prunus persica PRUPE_ppa001546mg N 0.784
Sb05g001500 Sorghum bicolor Sb05g001500 N 0.931
Solyc10g074680.1 Solanum lycopersicum Solyc10g074680.1 N 0.770
TCM_017746 Theobroma cacao TCM_017746 N 0.777