GLYMA13G30860 (Glycine max)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 GLYMA13G30860 T218864_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.855 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA13G30860.1 Homeodomain 41 97

Links

Other Homeodomain family TFs
Other Glycine max TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RLT1 Arabidopsis thaliana AT1G28420 D 0.855
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I 0.632
RLT2 Arabidopsis thaliana AT5G44180 I 0.664
BGIOSGA004179 Oryza indica BGIOSGA004179 I 0.653
BGIOSGA022450 Oryza indica BGIOSGA022450 I 0.686
Bo3g143570 Brassica oleracea Bo3g143570 I 0.822
Bo5g055970 Brassica oleracea Bo5g055970 I 0.854
Bo7g067190 Brassica oleracea Bo7g067190 I 0.668
Bra010869 Brassica rapa Bra010869 I 0.822
Bra032908 Brassica rapa Bra032908 I 0.853
Bra033725 Brassica rapa Bra033725 I 0.667
BRADI2G16647 Brachypodium distachyon BRADI2G16647 I 0.650
BRADI2G46230 Brachypodium distachyon BRADI2G46230 I 0.647
F775_01844 Aegilops tauschii F775_01844 I 0.647
HB-1 Arabidopsis lyrata fgenesh2_kg.1__3015__AT1G28420.1 I 0.855
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.681
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.659
GLYMA07G32180 Glycine max GLYMA07G32180 I 0.867
GLYMA13G24370 Glycine max GLYMA13G24370 I 0.867
GRMZM2G060541 Zea mays GRMZM2G060541 I 0.653
GRMZM2G122750 Zea mays GRMZM2G122750 I 0.641
GRMZM2G125294 Zea mays GRMZM2G125294 I 0.641
GRMZM2G159357 Zea mays GRMZM2G159357 I 0.653
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.675
LPERR01G22320 Leersia perrieri LPERR01G22320 I 0.653
LPERR05G21380 Leersia perrieri LPERR05G21380 I 0.686
MLOC_62571 Hordeum vulgare MLOC_62571 I 0.647
MTR_2g014490 Medicago truncatula MTR_2g014490 I 0.857
MTR_4g088375 Medicago truncatula MTR_4g088375 I 0.862
OB01G35240 Oryza brachyantha OB01G35240 I 0.653
OBART05G25730 Oryza barthii OBART05G25730 I 0.686
OGLUM01G29920 Oryza glumaepatula OGLUM01G29920 I 0.653
OGLUM05G27370 Oryza glumaepatula OGLUM05G27370 I 0.686
OMERI01G23740 Oryza meridionalis OMERI01G23740 I 0.653
ONIVA01G29520 Oryza nivara ONIVA01G29520 I 0.653
ONIVA05G27640 Oryza nivara ONIVA05G27640 I 0.686
OPUNC01G25990 Oryza punctata OPUNC01G25990 I 0.653
ORGLA05G0222200 Oryza glaberrima ORGLA05G0222200 I 0.686
ORUFI01G29060 Oryza rufipogon ORUFI01G29060 I 0.653
ORUFI05G27630 Oryza rufipogon ORUFI05G27630 I 0.686
OS01G0672201 Oryza sativa OS01G0672201 I 0.653
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.674
POPTR_0011s05660 Populus trichocarpa POPTR_0011s05660 I 0.846
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.671
PRUPE_ppa000115mg Prunus persica PRUPE_ppa000115mg I 0.857
Sb03g030770 Sorghum bicolor Sb03g030770 I 0.649
Sb03g030782 Sorghum bicolor Sb03g030782 I 0.649
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.640
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.640
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.653
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.653
Si004333m.g Setaria italica Si004333m.g I 0.653
Si020949m.g Setaria italica Si020949m.g I 0.643
Solyc02g077660.2 Solanum lycopersicum Solyc02g077660.2 I 0.835
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I 0.683
TCM_008214 Theobroma cacao TCM_008214 I 0.671
TCM_029805 Theobroma cacao TCM_029805 I 0.841
VIT_10s0003g00290 Vitis vinifera VIT_10s0003g00290 I 0.856
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.687
Ca_00337 Cicer arietinum Ca_00337 I 0.862
Ca_06343 Cicer arietinum Ca_06343 I 0.862
Ca_11272 Cicer arietinum Ca_11272 I 0.681
Cla009803 Citrullus lanatus Cla009803 I 0.857
Pm010098 Prunus mume Pm010098 I 0.857
29983.m003128 Ricinus communis 29983.m003128 I 0.675
30190.m011307 Ricinus communis 30190.m011307 I 0.790
cassava1593.valid.m1 Manihot esculenta cassava1593.valid.m1 I 0.857
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.675
Cucsa.046480 Cucumis sativus Cucsa.046480 I 0.857
fgenesh1_pg.scaffold_15000027 Physcomitrella patens fgenesh1_pg.scaffold_15000027 I 0.633
mgf006635m Mimulus guttatus mgf006635m I 0.808
mgf006858m Mimulus guttatus mgf006858m I 0.825
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.714
Bostr.15697s0165 Boechera stricta Bostr.15697s0165 I 0.855
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.681
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.680
Cagra.1822s0015 Capsella grandiflora Cagra.1822s0015 I 0.855
Carubv10025737m.g Capsella rubella Carubv10025737m.g I 0.680
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.675
Ciclev10014023m.g Citrus clementina Ciclev10014023m.g I 0.857
Eucgr.D00596 Eucalyptus grandis Eucgr.D00596 I 0.834
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.675
evm.TU.supercontig_27.2 Carica papaya evm.TU.supercontig_27.2 I 0.862
evm.TU.supercontig_83.97 Carica papaya evm.TU.supercontig_83.97 I 0.778
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.653
gene29752-v1.0-hybrid Fragaria vesca gene29752-v1.0-hybrid I 0.862
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.671
Gorai.010G243500 Gossypium raimondii Gorai.010G243500 I 0.841
Gorai.010G256900 Gossypium raimondii Gorai.010G256900 I 0.841
Lus10013979.g Linum usitatissimum Lus10013979.g I 0.845
Lus10015325.g Linum usitatissimum Lus10015325.g I 0.837
Lus10015400.g Linum usitatissimum Lus10015400.g I 0.857
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.639
Lus10025454.g Linum usitatissimum Lus10025454.g I 0.837
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.639
MDP0000192108 Malus domestica MDP0000192108 I 0.857
MDP0000288192 Malus domestica MDP0000288192 I 0.846
orange1.1g000279m.g Citrus sinensis orange1.1g000279m.g I 0.857
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I 0.675
Pavir.Ca00923 Panicum virgatum Pavir.Ca00923 I 0.642
Pavir.J20612 Panicum virgatum Pavir.J20612 I 0.642
SapurV1A.0012s0660 Salix purpurea SapurV1A.0012s0660 I 0.857
SapurV1A.0032s0540 Salix purpurea SapurV1A.0032s0540 I 0.856
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.674
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.675
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.674
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.674
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.681
Thhalv10006543m.g Eutrema salsugineum Thhalv10006543m.g I 0.855
PK06068.1 Cannabis sativa PK06068.1 I 0.683
PK13272.1 Cannabis sativa PK13272.1 I 0.855