ONIVA05G27640 (Oryza nivara)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ONIVA05G27640 T221662_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.688 0.719
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ONIVA05G27640.1 Homeodomain 57 113

Links

Other Homeodomain family TFs
Other Oryza nivara TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RLT1 Arabidopsis thaliana AT1G28420 D 0.688
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I 0.626
RLT2 Arabidopsis thaliana AT5G44180 I 0.669
BGIOSGA004179 Oryza indica BGIOSGA004179 I 0.681
BGIOSGA022450 Oryza indica BGIOSGA022450 I 0.867
Bo3g143570 Brassica oleracea Bo3g143570 I 0.687
Bo7g067190 Brassica oleracea Bo7g067190 I 0.673
Bra010869 Brassica rapa Bra010869 I 0.687
Bra032908 Brassica rapa Bra032908 I 0.687
Bra033725 Brassica rapa Bra033725 I 0.671
BRADI2G16647 Brachypodium distachyon BRADI2G16647 I 0.792
BRADI2G46230 Brachypodium distachyon BRADI2G46230 I 0.679
F775_01844 Aegilops tauschii F775_01844 I 0.679
HB-1 Arabidopsis lyrata fgenesh2_kg.1__3015__AT1G28420.1 I 0.688
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.685
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.658
GLYMA07G32180 Glycine max GLYMA07G32180 I 0.686
GLYMA13G24370 Glycine max GLYMA13G24370 I 0.686
GLYMA13G30860 Glycine max GLYMA13G30860 I 0.686
GRMZM2G060541 Zea mays GRMZM2G060541 I 0.819
GRMZM2G122750 Zea mays GRMZM2G122750 I 0.816
GRMZM2G125294 Zea mays GRMZM2G125294 I 0.816
GRMZM2G159357 Zea mays GRMZM2G159357 I 0.681
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.637
LPERR01G22320 Leersia perrieri LPERR01G22320 I 0.681
LPERR05G21380 Leersia perrieri LPERR05G21380 I 0.867
MLOC_62571 Hordeum vulgare MLOC_62571 I 0.679
MTR_2g014490 Medicago truncatula MTR_2g014490 I 0.686
MTR_4g088375 Medicago truncatula MTR_4g088375 I 0.686
OB01G35240 Oryza brachyantha OB01G35240 I 0.681
OBART05G25730 Oryza barthii OBART05G25730 I 0.867
OGLUM01G29920 Oryza glumaepatula OGLUM01G29920 I 0.681
OGLUM05G27370 Oryza glumaepatula OGLUM05G27370 I 0.867
OMERI01G23740 Oryza meridionalis OMERI01G23740 I 0.681
ONIVA01G29520 Oryza nivara ONIVA01G29520 I 0.681
OPUNC01G25990 Oryza punctata OPUNC01G25990 I 0.681
ORGLA05G0222200 Oryza glaberrima ORGLA05G0222200 I 0.867
ORUFI01G29060 Oryza rufipogon ORUFI01G29060 I 0.681
ORUFI05G27630 Oryza rufipogon ORUFI05G27630 I 0.867
OS01G0672201 Oryza sativa OS01G0672201 I 0.681
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.670
POPTR_0011s05660 Populus trichocarpa POPTR_0011s05660 I 0.675
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.670
PRUPE_ppa000115mg Prunus persica PRUPE_ppa000115mg I 0.686
Sb03g030770 Sorghum bicolor Sb03g030770 I 0.681
Sb03g030782 Sorghum bicolor Sb03g030782 I 0.681
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.611
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.611
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.657
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.657
Si004333m.g Setaria italica Si004333m.g I 0.681
Si020949m.g Setaria italica Si020949m.g I 0.817
Solyc02g077660.2 Solanum lycopersicum Solyc02g077660.2 I 0.664
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I 0.714
TCM_008214 Theobroma cacao TCM_008214 I 0.702
TCM_029805 Theobroma cacao TCM_029805 I 0.670
VIT_10s0003g00290 Vitis vinifera VIT_10s0003g00290 I 0.689
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.682
Ca_00337 Cicer arietinum Ca_00337 I 0.686
Ca_06343 Cicer arietinum Ca_06343 I 0.686
Ca_11272 Cicer arietinum Ca_11272 I 0.718
Cla009803 Citrullus lanatus Cla009803 I 0.686
Pm010098 Prunus mume Pm010098 I 0.686
29983.m003128 Ricinus communis 29983.m003128 I 0.670
30190.m011307 Ricinus communis 30190.m011307 I 0.618
cassava1593.valid.m1 Manihot esculenta cassava1593.valid.m1 I 0.686
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.670
Cucsa.046480 Cucumis sativus Cucsa.046480 I 0.686
fgenesh1_pg.scaffold_15000027 Physcomitrella patens fgenesh1_pg.scaffold_15000027 I 0.637
mgf006635m Mimulus guttatus mgf006635m I 0.636
mgf006858m Mimulus guttatus mgf006858m I 0.654
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.682
Bostr.15697s0165 Boechera stricta Bostr.15697s0165 I 0.688
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.685
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.685
Cagra.1822s0015 Capsella grandiflora Cagra.1822s0015 I 0.688
Carubv10025737m.g Capsella rubella Carubv10025737m.g I 0.685
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.670
Ciclev10014023m.g Citrus clementina Ciclev10014023m.g I 0.686
Eucgr.D00596 Eucalyptus grandis Eucgr.D00596 I 0.664
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.675
evm.TU.supercontig_27.2 Carica papaya evm.TU.supercontig_27.2 I 0.686
evm.TU.supercontig_83.97 Carica papaya evm.TU.supercontig_83.97 I 0.638
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.648
gene29752-v1.0-hybrid Fragaria vesca gene29752-v1.0-hybrid I 0.686
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.702
Gorai.010G243500 Gossypium raimondii Gorai.010G243500 I 0.670
Gorai.010G256900 Gossypium raimondii Gorai.010G256900 I 0.670
Lus10013979.g Linum usitatissimum Lus10013979.g I 0.674
Lus10015325.g Linum usitatissimum Lus10015325.g I 0.662
Lus10015400.g Linum usitatissimum Lus10015400.g I 0.686
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.638
Lus10025454.g Linum usitatissimum Lus10025454.g I 0.662
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.638
MDP0000192108 Malus domestica MDP0000192108 I 0.686
MDP0000288192 Malus domestica MDP0000288192 I 0.674
orange1.1g000279m.g Citrus sinensis orange1.1g000279m.g I 0.686
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I 0.670
Pavir.Ca00923 Panicum virgatum Pavir.Ca00923 I 0.818
Pavir.J20612 Panicum virgatum Pavir.J20612 I 0.818
SapurV1A.0012s0660 Salix purpurea SapurV1A.0012s0660 I 0.686
SapurV1A.0032s0540 Salix purpurea SapurV1A.0032s0540 I 0.684
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.670
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.670
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.670
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.670
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.685
Thhalv10006543m.g Eutrema salsugineum Thhalv10006543m.g I 0.688
PK06068.1 Cannabis sativa PK06068.1 I 0.682
PK13272.1 Cannabis sativa PK13272.1 I 0.684