Si020949m.g (Setaria italica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Si020949m.g T223212_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.645 0.684
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Si020949m Homeodomain 48 104

Links

Other Homeodomain family TFs
Other Setaria italica TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RLT1 Arabidopsis thaliana AT1G28420 D 0.645
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I 0.615
RLT2 Arabidopsis thaliana AT5G44180 I 0.620
BGIOSGA004179 Oryza indica BGIOSGA004179 I 0.669
BGIOSGA022450 Oryza indica BGIOSGA022450 I 0.817
Bo3g143570 Brassica oleracea Bo3g143570 I 0.644
Bo5g055970 Brassica oleracea Bo5g055970 I 0.644
Bo7g067190 Brassica oleracea Bo7g067190 I 0.648
Bra010869 Brassica rapa Bra010869 I 0.644
Bra032908 Brassica rapa Bra032908 I 0.643
Bra033725 Brassica rapa Bra033725 I 0.647
BRADI2G16647 Brachypodium distachyon BRADI2G16647 I 0.777
BRADI2G46230 Brachypodium distachyon BRADI2G46230 I 0.699
F775_01844 Aegilops tauschii F775_01844 I 0.699
HB-1 Arabidopsis lyrata fgenesh2_kg.1__3015__AT1G28420.1 I 0.645
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.637
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.615
GLYMA07G32180 Glycine max GLYMA07G32180 I 0.643
GLYMA13G24370 Glycine max GLYMA13G24370 I 0.643
GLYMA13G30860 Glycine max GLYMA13G30860 I 0.643
GRMZM2G060541 Zea mays GRMZM2G060541 I 0.839
GRMZM2G122750 Zea mays GRMZM2G122750 I 0.865
GRMZM2G125294 Zea mays GRMZM2G125294 I 0.865
GRMZM2G159357 Zea mays GRMZM2G159357 I 0.701
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.658
LPERR01G22320 Leersia perrieri LPERR01G22320 I 0.669
LPERR05G21380 Leersia perrieri LPERR05G21380 I 0.817
MLOC_62571 Hordeum vulgare MLOC_62571 I 0.699
MTR_2g014490 Medicago truncatula MTR_2g014490 I 0.643
MTR_4g088375 Medicago truncatula MTR_4g088375 I 0.643
OB01G35240 Oryza brachyantha OB01G35240 I 0.701
OBART05G25730 Oryza barthii OBART05G25730 I 0.817
OGLUM01G29920 Oryza glumaepatula OGLUM01G29920 I 0.669
OGLUM05G27370 Oryza glumaepatula OGLUM05G27370 I 0.817
OMERI01G23740 Oryza meridionalis OMERI01G23740 I 0.669
ONIVA01G29520 Oryza nivara ONIVA01G29520 I 0.669
ONIVA05G27640 Oryza nivara ONIVA05G27640 I 0.817
OPUNC01G25990 Oryza punctata OPUNC01G25990 I 0.669
ORGLA05G0222200 Oryza glaberrima ORGLA05G0222200 I 0.817
ORUFI01G29060 Oryza rufipogon ORUFI01G29060 I 0.669
ORUFI05G27630 Oryza rufipogon ORUFI05G27630 I 0.817
OS01G0672201 Oryza sativa OS01G0672201 I 0.669
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.650
POPTR_0011s05660 Populus trichocarpa POPTR_0011s05660 I 0.632
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.651
PRUPE_ppa000115mg Prunus persica PRUPE_ppa000115mg I 0.643
Sb03g030770 Sorghum bicolor Sb03g030770 I 0.701
Sb03g030782 Sorghum bicolor Sb03g030782 I 0.701
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.624
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.624
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.646
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.646
Si004333m.g Setaria italica Si004333m.g I 0.701
Solyc02g077660.2 Solanum lycopersicum Solyc02g077660.2 I 0.621
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I 0.672
TCM_008214 Theobroma cacao TCM_008214 I 0.684
TCM_029805 Theobroma cacao TCM_029805 I 0.627
VIT_10s0003g00290 Vitis vinifera VIT_10s0003g00290 I 0.642
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.639
Ca_00337 Cicer arietinum Ca_00337 I 0.643
Ca_06343 Cicer arietinum Ca_06343 I 0.643
Ca_11272 Cicer arietinum Ca_11272 I 0.670
Cla009803 Citrullus lanatus Cla009803 I 0.643
Pm010098 Prunus mume Pm010098 I 0.643
29983.m003128 Ricinus communis 29983.m003128 I 0.651
30190.m011307 Ricinus communis 30190.m011307 I 0.619
cassava1593.valid.m1 Manihot esculenta cassava1593.valid.m1 I 0.643
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.651
Cucsa.046480 Cucumis sativus Cucsa.046480 I 0.643
fgenesh1_pg.scaffold_15000027 Physcomitrella patens fgenesh1_pg.scaffold_15000027 I 0.649
mgf006635m Mimulus guttatus mgf006635m I 0.625
mgf006858m Mimulus guttatus mgf006858m I 0.642
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.638
Bostr.15697s0165 Boechera stricta Bostr.15697s0165 I 0.646
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.637
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.636
Cagra.1822s0015 Capsella grandiflora Cagra.1822s0015 I 0.645
Carubv10025737m.g Capsella rubella Carubv10025737m.g I 0.636
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.656
Ciclev10014023m.g Citrus clementina Ciclev10014023m.g I 0.643
Eucgr.D00596 Eucalyptus grandis Eucgr.D00596 I 0.620
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.651
evm.TU.supercontig_27.2 Carica papaya evm.TU.supercontig_27.2 I 0.643
evm.TU.supercontig_83.97 Carica papaya evm.TU.supercontig_83.97 I 0.656
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.637
gene29752-v1.0-hybrid Fragaria vesca gene29752-v1.0-hybrid I 0.643
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.684
Gorai.010G243500 Gossypium raimondii Gorai.010G243500 I 0.627
Gorai.010G256900 Gossypium raimondii Gorai.010G256900 I 0.627
Lus10013979.g Linum usitatissimum Lus10013979.g I 0.642
Lus10015325.g Linum usitatissimum Lus10015325.g I 0.619
Lus10015400.g Linum usitatissimum Lus10015400.g I 0.642
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.651
Lus10025454.g Linum usitatissimum Lus10025454.g I 0.619
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.651
MDP0000192108 Malus domestica MDP0000192108 I 0.643
MDP0000288192 Malus domestica MDP0000288192 I 0.643
orange1.1g000279m.g Citrus sinensis orange1.1g000279m.g I 0.643
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I 0.656
Pavir.Ca00923 Panicum virgatum Pavir.Ca00923 I 0.866
Pavir.J20612 Panicum virgatum Pavir.J20612 I 0.866
SapurV1A.0012s0660 Salix purpurea SapurV1A.0012s0660 I 0.643
SapurV1A.0032s0540 Salix purpurea SapurV1A.0032s0540 I 0.642
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.650
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.651
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.650
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.650
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.637
Thhalv10006543m.g Eutrema salsugineum Thhalv10006543m.g I 0.646
PK06068.1 Cannabis sativa PK06068.1 I 0.639
PK13272.1 Cannabis sativa PK13272.1 I 0.641