Solyc07g053610.2 (Solanum lycopersicum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Solyc07g053610.2 T223600_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.680 0.754
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc07g053610.2.1 Homeodomain 44 100

Links

Other Homeodomain family TFs
Other Solanum lycopersicum TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RLT1 Arabidopsis thaliana AT1G28420 D 0.680
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I 0.769
RLT2 Arabidopsis thaliana AT5G44180 I 0.806
BGIOSGA004179 Oryza indica BGIOSGA004179 I 0.677
BGIOSGA022450 Oryza indica BGIOSGA022450 I 0.714
Bo3g143570 Brassica oleracea Bo3g143570 I 0.684
Bo5g055970 Brassica oleracea Bo5g055970 I 0.684
Bo7g067190 Brassica oleracea Bo7g067190 I 0.810
Bra010869 Brassica rapa Bra010869 I 0.684
Bra032908 Brassica rapa Bra032908 I 0.683
Bra033725 Brassica rapa Bra033725 I 0.809
BRADI2G16647 Brachypodium distachyon BRADI2G16647 I 0.646
BRADI2G46230 Brachypodium distachyon BRADI2G46230 I 0.675
F775_01844 Aegilops tauschii F775_01844 I 0.675
HB-1 Arabidopsis lyrata fgenesh2_kg.1__3015__AT1G28420.1 I 0.685
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.823
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.801
GLYMA07G32180 Glycine max GLYMA07G32180 I 0.683
GLYMA13G24370 Glycine max GLYMA13G24370 I 0.683
GLYMA13G30860 Glycine max GLYMA13G30860 I 0.683
GRMZM2G060541 Zea mays GRMZM2G060541 I 0.677
GRMZM2G122750 Zea mays GRMZM2G122750 I 0.670
GRMZM2G125294 Zea mays GRMZM2G125294 I 0.670
GRMZM2G159357 Zea mays GRMZM2G159357 I 0.677
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.777
LPERR01G22320 Leersia perrieri LPERR01G22320 I 0.677
LPERR05G21380 Leersia perrieri LPERR05G21380 I 0.714
MLOC_62571 Hordeum vulgare MLOC_62571 I 0.675
MTR_2g014490 Medicago truncatula MTR_2g014490 I 0.687
MTR_4g088375 Medicago truncatula MTR_4g088375 I 0.683
OB01G35240 Oryza brachyantha OB01G35240 I 0.677
OBART05G25730 Oryza barthii OBART05G25730 I 0.714
OGLUM01G29920 Oryza glumaepatula OGLUM01G29920 I 0.677
OGLUM05G27370 Oryza glumaepatula OGLUM05G27370 I 0.714
OMERI01G23740 Oryza meridionalis OMERI01G23740 I 0.677
ONIVA01G29520 Oryza nivara ONIVA01G29520 I 0.677
ONIVA05G27640 Oryza nivara ONIVA05G27640 I 0.714
OPUNC01G25990 Oryza punctata OPUNC01G25990 I 0.677
ORGLA05G0222200 Oryza glaberrima ORGLA05G0222200 I 0.714
ORUFI01G29060 Oryza rufipogon ORUFI01G29060 I 0.677
ORUFI05G27630 Oryza rufipogon ORUFI05G27630 I 0.714
OS01G0672201 Oryza sativa OS01G0672201 I 0.677
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.817
POPTR_0011s05660 Populus trichocarpa POPTR_0011s05660 I 0.681
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.818
PRUPE_ppa000115mg Prunus persica PRUPE_ppa000115mg I 0.687
Sb03g030770 Sorghum bicolor Sb03g030770 I 0.677
Sb03g030782 Sorghum bicolor Sb03g030782 I 0.677
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.743
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.743
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.788
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.788
Si004333m.g Setaria italica Si004333m.g I 0.677
Si020949m.g Setaria italica Si020949m.g I 0.672
Solyc02g077660.2 Solanum lycopersicum Solyc02g077660.2 I 0.665
TCM_008214 Theobroma cacao TCM_008214 I 0.846
TCM_029805 Theobroma cacao TCM_029805 I 0.671
VIT_10s0003g00290 Vitis vinifera VIT_10s0003g00290 I 0.681
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.830
Ca_00337 Cicer arietinum Ca_00337 I 0.683
Ca_06343 Cicer arietinum Ca_06343 I 0.683
Ca_11272 Cicer arietinum Ca_11272 I 0.856
Cla009803 Citrullus lanatus Cla009803 I 0.687
Pm010098 Prunus mume Pm010098 I 0.687
29983.m003128 Ricinus communis 29983.m003128 I 0.818
30190.m011307 Ricinus communis 30190.m011307 I 0.620
cassava1593.valid.m1 Manihot esculenta cassava1593.valid.m1 I 0.687
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.818
Cucsa.046480 Cucumis sativus Cucsa.046480 I 0.687
fgenesh1_pg.scaffold_15000027 Physcomitrella patens fgenesh1_pg.scaffold_15000027 I 0.629
mgf006635m Mimulus guttatus mgf006635m I 0.637
mgf006858m Mimulus guttatus mgf006858m I 0.650
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.829
Bostr.15697s0165 Boechera stricta Bostr.15697s0165 I 0.686
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.823
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.822
Cagra.1822s0015 Capsella grandiflora Cagra.1822s0015 I 0.685
Carubv10025737m.g Capsella rubella Carubv10025737m.g I 0.822
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.813
Ciclev10014023m.g Citrus clementina Ciclev10014023m.g I 0.687
Eucgr.D00596 Eucalyptus grandis Eucgr.D00596 I 0.660
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.813
evm.TU.supercontig_27.2 Carica papaya evm.TU.supercontig_27.2 I 0.687
evm.TU.supercontig_83.97 Carica papaya evm.TU.supercontig_83.97 I 0.643
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.788
gene29752-v1.0-hybrid Fragaria vesca gene29752-v1.0-hybrid I 0.687
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.850
Gorai.010G243500 Gossypium raimondii Gorai.010G243500 I 0.671
Gorai.010G256900 Gossypium raimondii Gorai.010G256900 I 0.671
Lus10013979.g Linum usitatissimum Lus10013979.g I 0.675
Lus10015325.g Linum usitatissimum Lus10015325.g I 0.663
Lus10015400.g Linum usitatissimum Lus10015400.g I 0.687
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.781
Lus10025454.g Linum usitatissimum Lus10025454.g I 0.663
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.781
MDP0000192108 Malus domestica MDP0000192108 I 0.687
MDP0000288192 Malus domestica MDP0000288192 I 0.676
orange1.1g000279m.g Citrus sinensis orange1.1g000279m.g I 0.687
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I 0.813
Pavir.Ca00923 Panicum virgatum Pavir.Ca00923 I 0.671
Pavir.J20612 Panicum virgatum Pavir.J20612 I 0.671
SapurV1A.0012s0660 Salix purpurea SapurV1A.0012s0660 I 0.687
SapurV1A.0032s0540 Salix purpurea SapurV1A.0032s0540 I 0.690
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.817
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.818
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.817
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.817
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.823
Thhalv10006543m.g Eutrema salsugineum Thhalv10006543m.g I 0.686
PK06068.1 Cannabis sativa PK06068.1 I 0.825
PK13272.1 Cannabis sativa PK13272.1 I 0.681