TCM_029805 (Theobroma cacao)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 TCM_029805 T223926_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.839 0.842
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY28162 Homeodomain 28 84
EOY28163 Homeodomain 28 84
EOY28164 Homeodomain 28 84
EOY28165 Homeodomain 28 84

Links

Other Homeodomain family TFs
Other Theobroma cacao TFs

112 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RLT1 Arabidopsis thaliana AT1G28420 D 0.839
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I 0.611
RLT2 Arabidopsis thaliana AT5G44180 I 0.680
BGIOSGA004179 Oryza indica BGIOSGA004179 I 0.633
BGIOSGA022450 Oryza indica BGIOSGA022450 I 0.670
Bo3g143570 Brassica oleracea Bo3g143570 I 0.810
Bo5g055970 Brassica oleracea Bo5g055970 I 0.843
Bo7g067190 Brassica oleracea Bo7g067190 I 0.652
Bra010869 Brassica rapa Bra010869 I 0.810
Bra032908 Brassica rapa Bra032908 I 0.842
Bra033725 Brassica rapa Bra033725 I 0.651
BRADI2G16647 Brachypodium distachyon BRADI2G16647 I 0.634
BRADI2G46230 Brachypodium distachyon BRADI2G46230 I 0.631
F775_01844 Aegilops tauschii F775_01844 I 0.631
HB-1 Arabidopsis lyrata fgenesh2_kg.1__3015__AT1G28420.1 I 0.843
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.665
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.643
GLYMA07G32180 Glycine max GLYMA07G32180 I 0.841
GLYMA13G24370 Glycine max GLYMA13G24370 I 0.841
GLYMA13G30860 Glycine max GLYMA13G30860 I 0.841
GRMZM2G060541 Zea mays GRMZM2G060541 I 0.633
GRMZM2G122750 Zea mays GRMZM2G122750 I 0.625
GRMZM2G125294 Zea mays GRMZM2G125294 I 0.625
GRMZM2G159357 Zea mays GRMZM2G159357 I 0.633
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.659
LPERR01G22320 Leersia perrieri LPERR01G22320 I 0.633
LPERR05G21380 Leersia perrieri LPERR05G21380 I 0.670
MLOC_62571 Hordeum vulgare MLOC_62571 I 0.631
MTR_2g014490 Medicago truncatula MTR_2g014490 I 0.850
MTR_4g088375 Medicago truncatula MTR_4g088375 I 0.846
OB01G35240 Oryza brachyantha OB01G35240 I 0.633
OBART05G25730 Oryza barthii OBART05G25730 I 0.670
OGLUM01G29920 Oryza glumaepatula OGLUM01G29920 I 0.633
OGLUM05G27370 Oryza glumaepatula OGLUM05G27370 I 0.670
OMERI01G23740 Oryza meridionalis OMERI01G23740 I 0.633
ONIVA01G29520 Oryza nivara ONIVA01G29520 I 0.633
ONIVA05G27640 Oryza nivara ONIVA05G27640 I 0.670
OPUNC01G25990 Oryza punctata OPUNC01G25990 I 0.633
ORGLA05G0222200 Oryza glaberrima ORGLA05G0222200 I 0.670
ORUFI01G29060 Oryza rufipogon ORUFI01G29060 I 0.633
ORUFI05G27630 Oryza rufipogon ORUFI05G27630 I 0.670
OS01G0672201 Oryza sativa OS01G0672201 I 0.633
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.659
POPTR_0011s05660 Populus trichocarpa POPTR_0011s05660 I 0.835
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.660
PRUPE_ppa000115mg Prunus persica PRUPE_ppa000115mg I 0.850
Sb03g030770 Sorghum bicolor Sb03g030770 I 0.633
Sb03g030782 Sorghum bicolor Sb03g030782 I 0.633
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.624
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.624
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.637
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.637
Si004333m.g Setaria italica Si004333m.g I 0.633
Si020949m.g Setaria italica Si020949m.g I 0.627
Solyc02g077660.2 Solanum lycopersicum Solyc02g077660.2 I 0.824
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I 0.671
TCM_008214 Theobroma cacao TCM_008214 I 0.655
VIT_10s0003g00290 Vitis vinifera VIT_10s0003g00290 I 0.844
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.671
Ca_00337 Cicer arietinum Ca_00337 I 0.846
Ca_06343 Cicer arietinum Ca_06343 I 0.846
Ca_11272 Cicer arietinum Ca_11272 I 0.665
Cla009803 Citrullus lanatus Cla009803 I 0.850
Pm010098 Prunus mume Pm010098 I 0.850
29983.m003128 Ricinus communis 29983.m003128 I 0.660
30190.m011307 Ricinus communis 30190.m011307 I 0.783
cassava1593.valid.m1 Manihot esculenta cassava1593.valid.m1 I 0.850
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.660
Cucsa.046480 Cucumis sativus Cucsa.046480 I 0.850
fgenesh1_pg.scaffold_15000027 Physcomitrella patens fgenesh1_pg.scaffold_15000027 I 0.617
mgf006635m Mimulus guttatus mgf006635m I 0.808
mgf006858m Mimulus guttatus mgf006858m I 0.809
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.707
Bostr.15697s0165 Boechera stricta Bostr.15697s0165 I 0.844
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.665
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.664
Cagra.1822s0015 Capsella grandiflora Cagra.1822s0015 I 0.843
Carubv10025737m.g Capsella rubella Carubv10025737m.g I 0.664
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.655
Ciclev10014023m.g Citrus clementina Ciclev10014023m.g I 0.846
Eucgr.D00596 Eucalyptus grandis Eucgr.D00596 I 0.818
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.655
evm.TU.supercontig_27.2 Carica papaya evm.TU.supercontig_27.2 I 0.846
evm.TU.supercontig_83.97 Carica papaya evm.TU.supercontig_83.97 I 0.762
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.633
gene29752-v1.0-hybrid Fragaria vesca gene29752-v1.0-hybrid I 0.846
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.655
Gorai.010G243500 Gossypium raimondii Gorai.010G243500 I 0.867
Gorai.010G256900 Gossypium raimondii Gorai.010G256900 I 0.867
Lus10013979.g Linum usitatissimum Lus10013979.g I 0.838
Lus10015325.g Linum usitatissimum Lus10015325.g I 0.822
Lus10015400.g Linum usitatissimum Lus10015400.g I 0.850
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.623
Lus10025454.g Linum usitatissimum Lus10025454.g I 0.822
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.623
MDP0000192108 Malus domestica MDP0000192108 I 0.850
MDP0000288192 Malus domestica MDP0000288192 I 0.839
orange1.1g000279m.g Citrus sinensis orange1.1g000279m.g I 0.846
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I 0.655
Pavir.Ca00923 Panicum virgatum Pavir.Ca00923 I 0.626
Pavir.J20612 Panicum virgatum Pavir.J20612 I 0.626
SapurV1A.0012s0660 Salix purpurea SapurV1A.0012s0660 I 0.846
SapurV1A.0032s0540 Salix purpurea SapurV1A.0032s0540 I 0.845
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.659
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.660
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.659
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.659
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.665
Thhalv10006543m.g Eutrema salsugineum Thhalv10006543m.g I 0.844
PK06068.1 Cannabis sativa PK06068.1 I 0.667
PK13272.1 Cannabis sativa PK13272.1 I 0.844