Cagra.1822s0015 (Capsella grandiflora)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cagra.1822s0015 T228220_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.860 0.912
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1822s0015.1.p Homeodomain 43 99

Links

Other Homeodomain family TFs
Other Capsella grandiflora TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RLT1 Arabidopsis thaliana AT1G28420 D 0.860
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I 0.626
RLT2 Arabidopsis thaliana AT5G44180 I 0.667
BGIOSGA004179 Oryza indica BGIOSGA004179 I 0.646
BGIOSGA022450 Oryza indica BGIOSGA022450 I 0.688
Bo3g143570 Brassica oleracea Bo3g143570 I 0.830
Bo5g055970 Brassica oleracea Bo5g055970 I 0.862
Bo7g067190 Brassica oleracea Bo7g067190 I 0.670
Bra010869 Brassica rapa Bra010869 I 0.830
Bra032908 Brassica rapa Bra032908 I 0.863
Bra033725 Brassica rapa Bra033725 I 0.668
BRADI2G16647 Brachypodium distachyon BRADI2G16647 I 0.649
BRADI2G46230 Brachypodium distachyon BRADI2G46230 I 0.645
F775_01844 Aegilops tauschii F775_01844 I 0.645
HB-1 Arabidopsis lyrata fgenesh2_kg.1__3015__AT1G28420.1 I 0.865
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.682
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.658
GLYMA07G32180 Glycine max GLYMA07G32180 I 0.855
GLYMA13G24370 Glycine max GLYMA13G24370 I 0.855
GLYMA13G30860 Glycine max GLYMA13G30860 I 0.855
GRMZM2G060541 Zea mays GRMZM2G060541 I 0.646
GRMZM2G122750 Zea mays GRMZM2G122750 I 0.647
GRMZM2G125294 Zea mays GRMZM2G125294 I 0.647
GRMZM2G159357 Zea mays GRMZM2G159357 I 0.646
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.672
LPERR01G22320 Leersia perrieri LPERR01G22320 I 0.646
LPERR05G21380 Leersia perrieri LPERR05G21380 I 0.688
MLOC_62571 Hordeum vulgare MLOC_62571 I 0.645
MTR_2g014490 Medicago truncatula MTR_2g014490 I 0.859
MTR_4g088375 Medicago truncatula MTR_4g088375 I 0.855
OB01G35240 Oryza brachyantha OB01G35240 I 0.646
OBART05G25730 Oryza barthii OBART05G25730 I 0.688
OGLUM01G29920 Oryza glumaepatula OGLUM01G29920 I 0.646
OGLUM05G27370 Oryza glumaepatula OGLUM05G27370 I 0.688
OMERI01G23740 Oryza meridionalis OMERI01G23740 I 0.646
ONIVA01G29520 Oryza nivara ONIVA01G29520 I 0.646
ONIVA05G27640 Oryza nivara ONIVA05G27640 I 0.688
OPUNC01G25990 Oryza punctata OPUNC01G25990 I 0.646
ORGLA05G0222200 Oryza glaberrima ORGLA05G0222200 I 0.688
ORUFI01G29060 Oryza rufipogon ORUFI01G29060 I 0.646
ORUFI05G27630 Oryza rufipogon ORUFI05G27630 I 0.688
OS01G0672201 Oryza sativa OS01G0672201 I 0.646
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.674
POPTR_0011s05660 Populus trichocarpa POPTR_0011s05660 I 0.848
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.673
PRUPE_ppa000115mg Prunus persica PRUPE_ppa000115mg I 0.859
Sb03g030770 Sorghum bicolor Sb03g030770 I 0.646
Sb03g030782 Sorghum bicolor Sb03g030782 I 0.646
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.646
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.646
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.657
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.657
Si004333m.g Setaria italica Si004333m.g I 0.646
Si020949m.g Setaria italica Si020949m.g I 0.645
Solyc02g077660.2 Solanum lycopersicum Solyc02g077660.2 I 0.837
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I 0.685
TCM_008214 Theobroma cacao TCM_008214 I 0.668
TCM_029805 Theobroma cacao TCM_029805 I 0.843
VIT_10s0003g00290 Vitis vinifera VIT_10s0003g00290 I 0.853
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.685
Ca_00337 Cicer arietinum Ca_00337 I 0.855
Ca_06343 Cicer arietinum Ca_06343 I 0.855
Ca_11272 Cicer arietinum Ca_11272 I 0.678
Cla009803 Citrullus lanatus Cla009803 I 0.859
Pm010098 Prunus mume Pm010098 I 0.859
29983.m003128 Ricinus communis 29983.m003128 I 0.673
30190.m011307 Ricinus communis 30190.m011307 I 0.796
cassava1593.valid.m1 Manihot esculenta cassava1593.valid.m1 I 0.859
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.673
Cucsa.046480 Cucumis sativus Cucsa.046480 I 0.859
fgenesh1_pg.scaffold_15000027 Physcomitrella patens fgenesh1_pg.scaffold_15000027 I 0.639
mgf006635m Mimulus guttatus mgf006635m I 0.807
mgf006858m Mimulus guttatus mgf006858m I 0.824
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.717
Bostr.15697s0165 Boechera stricta Bostr.15697s0165 I 0.866
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.682
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.683
Carubv10025737m.g Capsella rubella Carubv10025737m.g I 0.683
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.668
Ciclev10014023m.g Citrus clementina Ciclev10014023m.g I 0.859
Eucgr.D00596 Eucalyptus grandis Eucgr.D00596 I 0.833
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.668
evm.TU.supercontig_27.2 Carica papaya evm.TU.supercontig_27.2 I 0.859
evm.TU.supercontig_83.97 Carica papaya evm.TU.supercontig_83.97 I 0.775
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.648
gene29752-v1.0-hybrid Fragaria vesca gene29752-v1.0-hybrid I 0.859
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.668
Gorai.010G243500 Gossypium raimondii Gorai.010G243500 I 0.843
Gorai.010G256900 Gossypium raimondii Gorai.010G256900 I 0.843
Lus10013979.g Linum usitatissimum Lus10013979.g I 0.848
Lus10015325.g Linum usitatissimum Lus10015325.g I 0.837
Lus10015400.g Linum usitatissimum Lus10015400.g I 0.860
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.636
Lus10025454.g Linum usitatissimum Lus10025454.g I 0.837
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.636
MDP0000192108 Malus domestica MDP0000192108 I 0.859
MDP0000288192 Malus domestica MDP0000288192 I 0.848
orange1.1g000279m.g Citrus sinensis orange1.1g000279m.g I 0.859
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I 0.668
Pavir.Ca00923 Panicum virgatum Pavir.Ca00923 I 0.645
Pavir.J20612 Panicum virgatum Pavir.J20612 I 0.645
SapurV1A.0012s0660 Salix purpurea SapurV1A.0012s0660 I 0.859
SapurV1A.0032s0540 Salix purpurea SapurV1A.0032s0540 I 0.858
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.674
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.673
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.674
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.674
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.682
Thhalv10006543m.g Eutrema salsugineum Thhalv10006543m.g I 0.864
PK06068.1 Cannabis sativa PK06068.1 I 0.680
PK13272.1 Cannabis sativa PK13272.1 I 0.855