Cmyd_10002838 (Chelonia mydas)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00605 (IRF) IPR001346 Cmyd_10002838 T244522_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF5
M03332_2.00 		Homo sapiens
YCGAAACCGAAMCY
RGKTTCGGTTTCGR		 SELEX
Jolma et al.(2013)
IRF5_1 		0.838 0.838
IRF5
M03333_2.00 		Homo sapiens
HACCGAAACYV
BRGTTTCGGTD		 SELEX
Jolma et al.(2013)
IRF5_2 		0.838 0.838
IRF5
M05535_2.00 		Homo sapiens
NCGAAACCGAWACH
DGTWTCGGTTTCGN		 SELEX
Yin et al.(2017)
IRF5_eDBD_HT-SELEX 		0.838 0.838
IRF5
M05537_2.00 		Homo sapiens
NCGAAACCGAAACY
RGTTTCGGTTTCGN		 SELEX
Yin et al.(2017)
IRF5_FL_HT-SELEX 		0.838 0.838
IRF5
M10884_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF5_Q3 		0.838 0.838
IRF5
M05536_2.00 		Homo sapiens
NYGAWACYGAWACH
DGTWTCRGTWTCRN		 SELEX
Yin et al.(2017)
IRF5_eDBD_Methyl-HT-SELEX 		0.838 0.838
IRF5
M05538_2.00 		Homo sapiens
NYGAAACCGAWACY
RGTWTCGGTTTCRN		 SELEX
Yin et al.(2017)
IRF5_FL_Methyl-HT-SELEX 		0.838 0.838
Irf5
M00177_2.00 		Mus musculus
NNNHGADASH
DSTHTCDNNN		 PBM
Badis et al.(2009)
Irf5_3874 		0.819 0.819
IRF5
M02256_2.00 		Oryctolagus cuniculus
NHCGAAACYN
NRGTTTCGDN		 PBM
Weirauch et al.(2014)
pTH9272 		0.819 0.819
irf5.L
M02260_2.00 		Xenopus laevis
VNCGADACHN
NDGTHTCGNB		 PBM
Weirauch et al.(2014)
pTH9367 		0.800 0.800
IRF6
M02254_2.00 		Meleagris gallopavo
NRNCGAWACY
RGTWTCGNYN		 PBM
Weirauch et al.(2014)
pTH9210 		0.762 0.762
IRF6
M02253_2.00 		Gallus gallus
NNMCNAAWNN
NNWTTNGKNN		 PBM
Weirauch et al.(2014)
pTH9178 		0.752 0.752
irf6.2
M02259_2.00 		Xenopus tropicalis
NVNHGAWACH
DGTWTCDNBN		 PBM
Weirauch et al.(2014)
pTH9302 		0.752 0.752
Irf6
M00176_2.00 		Mus musculus
NNNHGADASN
NSTHTCDNNN		 PBM
Badis et al.(2009)
Irf6_3803 		0.724 0.724
IRF6
M05527_2.00 		Homo sapiens
RGTWTCGNNNNNNYGAWACY
RGTWTCRNNNNNNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_HT-SELEX 		0.724 0.724
IRF6
M05529_2.00 		Homo sapiens
ACCGAAACT
AGTTTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_HT-SELEX 		0.724 0.724
IRF6
M05528_2.00 		Homo sapiens
RGTWTCGNHNNDNYGAWACY
RGTWTCRNHNNDNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_Methyl-HT-SELEX 		0.724 0.724
IRF6
M05530_2.00 		Homo sapiens
ACCGAWACY
RGTWTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_Methyl-HT-SELEX 		0.724 0.724
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10002838 IRF 9 114

Links

Other IRF family TFs
Other Chelonia mydas TFs

122 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30169.m006322 Ricinus communis 30169.m006322 I
POPTR_0007s08190 Populus trichocarpa POPTR_0007s08190 I
POPTR_0013s14560 Populus trichocarpa POPTR_0013s14560 I
Sb06g027180 Sorghum bicolor Sb06g027180 I
Si010384m.g Setaria italica Si010384m.g I
Solyc07g054980.1 Solanum lycopersicum Solyc07g054980.1 I
TCM_007865 Theobroma cacao TCM_007865 I
VIT_12s0134g00480 Vitis vinifera VIT_12s0134g00480 I
VIT_12s0134g00490 Vitis vinifera VIT_12s0134g00490 I
VIT_19s0085g00050 Vitis vinifera VIT_19s0085g00050 I
BGIOSGA014440 Oryza indica BGIOSGA014440 I
Gorai.002G016800 Gossypium raimondii Gorai.002G016800 I
Gorai.002G106300 Gossypium raimondii Gorai.002G106300 I
Gorai.012G132400 Gossypium raimondii Gorai.012G132400 I
Lus10022021.g Linum usitatissimum Lus10022021.g I
Lus10039734.g Linum usitatissimum Lus10039734.g I
Lus10039735.g Linum usitatissimum Lus10039735.g I
MDP0000155426 Malus domestica MDP0000155426 I
SapurV1A.0284s0110 Salix purpurea SapurV1A.0284s0110 I
OS04G0594100 Oryza sativa OS04G0594100 I
AMTR_s00036p00107460 Amborella trichopoda AMTR_s00036p00107460 I
BRADI5G20130 Brachypodium distachyon BRADI5G20130 I
AtMYB10 Arabidopsis lyrata fgenesh2_kg.3__1346__AT3G12820.1 I
GLYMA06G45554 Glycine max GLYMA06G45554 I
GLYMA12G11330 Glycine max GLYMA12G11330 I
GRMZM2G038722 Zea mays GRMZM2G038722 I
GSMUA_Achr5G14600_001 Musa acuminata GSMUA_Achr5G14600_001 I
OB04G30570 Oryza brachyantha OB04G30570 I
OBART04G23680 Oryza barthii OBART04G23680 I
OMERI04G19570 Oryza meridionalis OMERI04G19570 I
OGLUM04G23630 Oryza glumaepatula OGLUM04G23630 I
POPTR_0005s09930 Populus trichocarpa POPTR_0005s09930 I
ORUFI04G25410 Oryza rufipogon ORUFI04G25410 I
ONIVA04G19740 Oryza nivara ONIVA04G19740 I
OPUNC04G21230 Oryza punctata OPUNC04G21230 I
ORGLA04G0202400 Oryza glaberrima ORGLA04G0202400 I
PK24260.1 Cannabis sativa PK24260.1 N
SapurV1A.0048s0160 Salix purpurea SapurV1A.0048s0160 N
MDP0000407613 Malus domestica MDP0000407613 N
Lus10039772.g Linum usitatissimum Lus10039772.g N
POPTR_0019s14140 Populus trichocarpa POPTR_0019s14140 N
PRUPE_ppa026553mg Prunus persica PRUPE_ppa026553mg N
Lus10033738.g Linum usitatissimum Lus10033738.g N
Lus10031607.g Linum usitatissimum Lus10031607.g N
Lus10018547.g Linum usitatissimum Lus10018547.g N
Lus10018546.g Linum usitatissimum Lus10018546.g N
GLYMA12G32541 Glycine max GLYMA12G32541 N
Gorai.005G206800 Gossypium raimondii Gorai.005G206800 N
gene01998-v1.0-hybrid Fragaria vesca gene01998-v1.0-hybrid N
evm.TU.supercontig_34.62 Carica papaya evm.TU.supercontig_34.62 N
MTR_2g089450 Medicago truncatula MTR_2g089450 N
Pm015302 Prunus mume Pm015302 N
Pm009880 Prunus mume Pm009880 N