gene04949-v1.0-hybrid (Fragaria vesca)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 gene04949-v1.0-hybrid T258305_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna04949.1-v1.0-hybrid MADS box 10 58

Links

Other MADS box family TFs
Other Fragaria vesca TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL80 Arabidopsis thaliana AT5G48670 D 0.708
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.708
AT3G05860 Arabidopsis thaliana AT3G05860 I 0.708
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.708
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.729
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.729
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.729
MDP0000846004 Malus domestica MDP0000846004 I 0.708
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.771
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.812
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.771
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.729
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.708
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.750
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.750
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.729
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.792
30199.m000879 Ricinus communis 30199.m000879 I 0.708
30128.m008984 Ricinus communis 30128.m008984 I 0.729
Cla005226 Citrullus lanatus Cla005226 I 0.711
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.792
TCM_042799 Theobroma cacao TCM_042799 I 0.729
TCM_026842 Theobroma cacao TCM_026842 I 0.729
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.750
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.771
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.750
Bo2g104810 Brassica oleracea Bo2g104810 I 0.708
gene15899-v1.0-hybrid Fragaria vesca gene15899-v1.0-hybrid N 0.750