SAPIO_CDS9685 (Scedosporium apiospermum)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 SAPIO_CDS9685 T318779_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX1
M00066_2.00 		Saccharomyces cerevisiae
NSGTTGCYAN
NTRGCAACSN		 PBM
Badis et al.(2008)
RFX1_4537 		0.675 0.513
RFX1
M07494_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1 		0.675 0.513
RFX1
M08600_2.00 		Saccharomyces cerevisiae
CGTYRBYAYRGYWACM
KGTWRCYRTRVYRACG		 Misc
DeBoer et al.(2011)
YLR176C_1478 		0.675 0.513
RFX1
M08601_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 Misc
DeBoer et al.(2011)
YLR176C_496 		0.675 0.513
RFX1
M11251_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$RFX1_02 		0.675 0.513
daf-19
M00709_2.00 		Caenorhabditis elegans
SGTTRCTADG
CHTAGYAACS		 PBM
Narasimhan et al.(2015)
pTH10021 		0.659 0.449
RFX2
M02449_2.00 		Homo sapiens
BGTHRYYADG
CHTRRYDACV		 PBM
Weirauch et al.(2014)
pTH9194 		0.652 0.397
RFX2
M02450_2.00 		Ornithorhynchus anatinus
NGTHRYYANV
BNTRRYDACN		 PBM
Weirauch et al.(2014)
pTH9269 		0.652 0.397
XP_002157607.1
M02456_2.00 		Hydra magnipapillata
GTHDYYDNVN
NBNHRRHDAC		 PBM
Weirauch et al.(2014)
pTH9199 		0.651 0.410
G4VLF2_SCHMA
M02452_2.00 		Schistosoma mansoni
GTTGCTAD
HTAGCAAC		 PBM
Weirauch et al.(2014)
pTH8587 		0.650 0.397
Sjc_0102030
M02455_2.00 		Schistosoma japonicum
GTTRCYANG
CNTRGYAAC		 PBM
Weirauch et al.(2014)
pTH9285 		0.650 0.397
Rfx
M03959_2.00 		Drosophila melanogaster
NGTHRCYATRGYDACN
NGTHRCYATRGYDACN		 SELEX
Nitta et al.(2015)
Rfx_1 		0.650 0.385
Rfx
M03960_2.00 		Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC		 SELEX
Nitta et al.(2015)
Rfx_2 		0.650 0.385
Rfx
M03961_2.00 		Drosophila melanogaster
BGTWRCCATGGYWACV
BGTWRCCATGGYWACV		 SELEX
Nitta et al.(2015)
Rfx_3 		0.650 0.385
Rfx
M03962_2.00 		Drosophila melanogaster
GTTRCYAWTRGYAAC
GTTRCYAWTRGYAAC		 SELEX
Nitta et al.(2015)
Rfx_4 		0.650 0.385
Rfx
M03963_2.00 		Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC		 SELEX
Nitta et al.(2015)
Rfx_5 		0.650 0.385
Rfx3
M00188_2.00 		Mus musculus
SNTRRHDACN
NGTHDYYANS		 PBM
Badis et al.(2009)
Rfx3_3961 		0.650 0.385
Rfx3
M03463_2.00 		Mus musculus
SGTTRCCATGGYAACS
SGTTRCCATGGYAACS		 SELEX
Jolma et al.(2013)
Rfx3_1 		0.650 0.385
Rfx3
M09368_2.00 		Mus musculus
BBGTTGCCATGGNRAC
GTYNCCATGGCAACVV		 Misc
Kulakovskiy et al.(2013)
RFX3_MOUSE.H11MO.0.C 		0.650 0.385
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEZ39728 RFX 200 277

Links

Other RFX family TFs
Other Scedosporium apiospermum TFs

313 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ABF2 Arabidopsis thaliana AT1G45249 D
ABF1 Arabidopsis thaliana AT1G49720 D
ABI5 Arabidopsis thaliana AT2G36270 D
ABF4 Arabidopsis thaliana AT3G19290 D
ABF3 Arabidopsis thaliana AT4G34000 D
OS08G0471950 Oryza sativa OS08G0471950 D
PK18009.1 Cannabis sativa PK18009.1 D
AMTR_s00132p00065700 Amborella trichopoda AMTR_s00132p00065700 I
BGIOSGA028831 Oryza indica BGIOSGA028831 I
BGIOSGA030899 Oryza indica BGIOSGA030899 I
Bo1g007700 Brassica oleracea Bo1g007700 I
Bo1g114840 Brassica oleracea Bo1g114840 I
Bo3g073080 Brassica oleracea Bo3g073080 I
Bo5g115300 Brassica oleracea Bo5g115300 I
Bo6g006970 Brassica oleracea Bo6g006970 I
Bo6g018480 Brassica oleracea Bo6g018480 I
Bo7g116570 Brassica oleracea Bo7g116570 I
Bra011485 Brassica rapa Bra011485 I
Bra018800 Brassica rapa Bra018800 I
Bra022409 Brassica rapa Bra022409 I
Bra037533 Brassica rapa Bra037533 I
Bra040260 Brassica rapa Bra040260 I
BRADI3G38200 Brachypodium distachyon BRADI3G38200 I
BRADI4G32090 Brachypodium distachyon BRADI4G32090 I
ABF2 Arabidopsis lyrata fgenesh2_kg.1__3804__AT1G45249.1 I
ABF3 Arabidopsis lyrata fgenesh2_kg.7__705__AT4G34000.1 I
GLYMA04G04170 Glycine max GLYMA04G04170 I
GLYMA06G04353 Glycine max GLYMA06G04353 I
GLYMA07G33600 Glycine max GLYMA07G33600 I
GLYMA13G22061 Glycine max GLYMA13G22061 I
GLYMA19G37910 Glycine max GLYMA19G37910 I
GRMZM2G002075 Zea mays GRMZM2G002075 I
GRMZM2G157722 Zea mays GRMZM2G157722 I
GRMZM2G478417 Zea mays GRMZM2G478417 I
GSMUA_Achr3G07000_001 Musa acuminata GSMUA_Achr3G07000_001 I
GSMUA_Achr5G05690_001 Musa acuminata GSMUA_Achr5G05690_001 I
GSMUA_Achr5G24570_001 Musa acuminata GSMUA_Achr5G24570_001 I
GSMUA_Achr6G04270_001 Musa acuminata GSMUA_Achr6G04270_001 I
GSMUA_Achr6G30550_001 Musa acuminata GSMUA_Achr6G30550_001 I
GSMUA_Achr9G27130_001 Musa acuminata GSMUA_Achr9G27130_001 I
LPERR08G14740 Leersia perrieri LPERR08G14740 I
LPERR09G09170 Leersia perrieri LPERR09G09170 I
MLOC_66546 Hordeum vulgare MLOC_66546 I
MTR_3g101780 Medicago truncatula MTR_3g101780 I
MTR_4g085910 Medicago truncatula MTR_4g085910 I
OB02G40680 Oryza brachyantha OB02G40680 I
OB08G24950 Oryza brachyantha OB08G24950 I
OB09G19140 Oryza brachyantha OB09G19140 I
OBART01G37980 Oryza barthii OBART01G37980 I
OBART02G33770 Oryza barthii OBART02G33770 I
OBART08G17810 Oryza barthii OBART08G17810 I
OGLUM01G42150 Oryza glumaepatula OGLUM01G42150 I
OGLUM08G18640 Oryza glumaepatula OGLUM08G18640 I
OGLUM09G13130 Oryza glumaepatula OGLUM09G13130 I
OLONG_000475 Oryza longistaminata OLONG_000475 I
OMERI09G10130 Oryza meridionalis OMERI09G10130 I
ONIVA04G25730 Oryza nivara ONIVA04G25730 I
ONIVA08G19830 Oryza nivara ONIVA08G19830 I
OPUNC05G18710 Oryza punctata OPUNC05G18710 I
OPUNC08G15700 Oryza punctata OPUNC08G15700 I
OPUNC09G11090 Oryza punctata OPUNC09G11090 I
ORGLA08G0211300 Oryza glaberrima ORGLA08G0211300 I
ORGLA09G0097200 Oryza glaberrima ORGLA09G0097200 I
ORUFI01G41310 Oryza rufipogon ORUFI01G41310 I
ORUFI08G19970 Oryza rufipogon ORUFI08G19970 I
OS09G0456200 Oryza sativa OS09G0456200 I
PGSC0003DMG400002660 Solanum tuberosum PGSC0003DMG400002660 I
PGSC0003DMG400006211 Solanum tuberosum PGSC0003DMG400006211 I
PGSC0003DMG400008011 Solanum tuberosum PGSC0003DMG400008011 I
PGSC0003DMG400022931 Solanum tuberosum PGSC0003DMG400022931 I
PGSC0003DMG400025889 Solanum tuberosum PGSC0003DMG400025889 I
POPTR_0002s12710 Populus trichocarpa POPTR_0002s12710 I
ABI5 Populus trichocarpa POPTR_0006s08300 I
POPTR_0009s10400 Populus trichocarpa POPTR_0009s10400 I
POPTR_0014s02810 Populus trichocarpa POPTR_0014s02810 I
PRUPE_ppa006503mg Prunus persica PRUPE_ppa006503mg I
PRUPE_ppa006752mg Prunus persica PRUPE_ppa006752mg I
Sb06g026410 Sorghum bicolor Sb06g026410 I
Sb07g022965 Sorghum bicolor Sb07g022965 I
Sb08g003760 Sorghum bicolor Sb08g003760 I
SELMODRAFT_177659 Selaginella moellendorffii SELMODRAFT_177659 I
SELMODRAFT_266892 Selaginella moellendorffii SELMODRAFT_266892 I
SELMODRAFT_443424 Selaginella moellendorffii SELMODRAFT_443424 I
SELMODRAFT_91900 Selaginella moellendorffii SELMODRAFT_91900 I
SELMODRAFT_94516 Selaginella moellendorffii SELMODRAFT_94516 I
Si013904m.g Setaria italica Si013904m.g I
Si017618m.g Setaria italica Si017618m.g I
Si030114m.g Setaria italica Si030114m.g I
Solyc01g108080.2 Solanum lycopersicum Solyc01g108080.2 I
Solyc04g078840.2 Solanum lycopersicum Solyc04g078840.2 I
Solyc11g044560.1 Solanum lycopersicum Solyc11g044560.1 I
TCM_007074 Theobroma cacao TCM_007074 I
TCM_022574 Theobroma cacao TCM_022574 I
TCM_033824 Theobroma cacao TCM_033824 I
TRIUR3_26781 Triticum urartu TRIUR3_26781 I
VIT_03s0063g00310 Vitis vinifera VIT_03s0063g00310 I
DPBF2 Vitis vinifera VIT_06s0080g00340 I
ABF2 Vitis vinifera VIT_18s0001g10450 I
Ca_01548 Cicer arietinum Ca_01548 I
Cla016272 Citrullus lanatus Cla016272 I
Cla022926 Citrullus lanatus Cla022926 I
Pm005288 Prunus mume Pm005288 I
Pm021430 Prunus mume Pm021430 I
Pm026185 Prunus mume Pm026185 I
29801.m003176 Ricinus communis 29801.m003176 I
30170.m013868 Ricinus communis 30170.m013868 I
cassava11518.m1 Manihot esculenta cassava11518.m1 I
cassava12275.valid.m1 Manihot esculenta cassava12275.valid.m1 I
cassava42669.valid.m1 Manihot esculenta cassava42669.valid.m1 I
cassava42743.valid.m1 Manihot esculenta cassava42743.valid.m1 I
cassava42744.valid.m1 Manihot esculenta cassava42744.valid.m1 I
cassava42745.valid.m1 Manihot esculenta cassava42745.valid.m1 I
Cucsa.219780 Cucumis sativus Cucsa.219780 I
Cucsa.396070 Cucumis sativus Cucsa.396070 I
mgf002047m Mimulus guttatus mgf002047m I
mgf002176m Mimulus guttatus mgf002176m I
mgf007524m Mimulus guttatus mgf007524m I
mgf014602m Mimulus guttatus mgf014602m I
mgf015092m Mimulus guttatus mgf015092m I
mgf020824m Mimulus guttatus mgf020824m I
Aquca_007_00660 Aquilegia coerulea Aquca_007_00660 I
Aquca_072_00142 Aquilegia coerulea Aquca_072_00142 I
Bostr.12302s0127 Boechera stricta Bostr.12302s0127 I
Bostr.19424s0732 Boechera stricta Bostr.19424s0732 I
Bostr.26675s0197 Boechera stricta Bostr.26675s0197 I
Bostr.7867s1253 Boechera stricta Bostr.7867s1253 I
Cagra.10917s0002 Capsella grandiflora Cagra.10917s0002 I
Cagra.1305s0026 Capsella grandiflora Cagra.1305s0026 I
Carubv10006251m.g Capsella rubella Carubv10006251m.g I
Carubv10009177m.g Capsella rubella Carubv10009177m.g I
Carubv10009399m.g Capsella rubella Carubv10009399m.g I
Carubv10013729m.g Capsella rubella Carubv10013729m.g I
Ciclev10001159m.g Citrus clementina Ciclev10001159m.g I
Ciclev10028435m.g Citrus clementina Ciclev10028435m.g I
Eucgr.F02337 Eucalyptus grandis Eucgr.F02337 I
Eucgr.G01436 Eucalyptus grandis Eucgr.G01436 I
evm.TU.supercontig_49.26 Carica papaya evm.TU.supercontig_49.26 I
evm.TU.supercontig_62.4 Carica papaya evm.TU.supercontig_62.4 I
gene09110-v1.0-hybrid Fragaria vesca gene09110-v1.0-hybrid I
gene28250-v1.0-hybrid Fragaria vesca gene28250-v1.0-hybrid I
Gorai.002G240500 Gossypium raimondii Gorai.002G240500 I
Gorai.005G102300 Gossypium raimondii Gorai.005G102300 I
Gorai.005G237400 Gossypium raimondii Gorai.005G237400 I
Gorai.008G024700 Gossypium raimondii Gorai.008G024700 I
Gorai.009G212600 Gossypium raimondii Gorai.009G212600 I
Gorai.013G044500 Gossypium raimondii Gorai.013G044500 I
Lus10002399.g Linum usitatissimum Lus10002399.g I
Lus10009755.g Linum usitatissimum Lus10009755.g I
Lus10017049.g Linum usitatissimum Lus10017049.g I
Lus10027897.g Linum usitatissimum Lus10027897.g I
MDP0000248567 Malus domestica MDP0000248567 I
MDP0000296303 Malus domestica MDP0000296303 I
MDP0000701734 Malus domestica MDP0000701734 I
orange1.1g013197m.g Citrus sinensis orange1.1g013197m.g I
orange1.1g021624m.g Citrus sinensis orange1.1g021624m.g I
orange1.1g025340m.g Citrus sinensis orange1.1g025340m.g I
Pavir.Ba02029 Panicum virgatum Pavir.Ba02029 I
Pavir.Fa00674 Panicum virgatum Pavir.Fa00674 I
Pavir.Fb01750 Panicum virgatum Pavir.Fb01750 I
SapurV1A.0167s0060 Salix purpurea SapurV1A.0167s0060 I
SapurV1A.0643s0160 Salix purpurea SapurV1A.0643s0160 I
SapurV1A.0878s0160 Salix purpurea SapurV1A.0878s0160 I
SapurV1A.3185s0030 Salix purpurea SapurV1A.3185s0030 I
Thhalv10011493m.g Eutrema salsugineum Thhalv10011493m.g I
Thhalv10020772m.g Eutrema salsugineum Thhalv10020772m.g I
PK02169.1 Cannabis sativa PK02169.1 I
chr1.CM0010.310.nd Lotus japonicus chr1.CM0010.310.nd I
LjT07K13.110.nd Lotus japonicus LjT07K13.110.nd I