PGSC0003DMG400026736 (Solanum tuberosum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 PGSC0003DMG400026736 T322932_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL10
M01084_2.00 		Arabidopsis thaliana
NNGTACGRHN
NDYCGTACNN		 PBM
Sullivan et al.(2014)
pTH9749 		0.931 0.787
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400068752 SBP 121 195

Links

Other SBP family TFs
Other Solanum tuberosum TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SPL10 Arabidopsis thaliana AT1G27370 D 0.931
Bo5g051970 Brassica oleracea Bo5g051970 I 0.920
Bo7g049940 Brassica oleracea Bo7g049940 I 0.886
Bra030041 Brassica rapa Bra030041 I 0.886
Bra032823 Brassica rapa Bra032823 I 0.924
BRADI3G05510 Brachypodium distachyon BRADI3G05510 I 0.971
SPL10 Arabidopsis lyrata fgenesh2_kg.1__2893__AT1G27370.2 I 0.888
GSMUA_Achr4G12470_001 Musa acuminata GSMUA_Achr4G12470_001 I 0.973
GSMUA_Achr9G23140_001 Musa acuminata GSMUA_Achr9G23140_001 I 0.975
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I 0.978
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I 0.978
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I 0.979
Ca_08506 Cicer arietinum Ca_08506 I 0.914
Ca_11356 Cicer arietinum Ca_11356 I 0.969
29929.m004641 Ricinus communis 29929.m004641 I 0.977
mgf019346m Mimulus guttatus mgf019346m I 0.971
Aquca_018_00218 Aquilegia coerulea Aquca_018_00218 I 0.970
Eucgr.B03500 Eucalyptus grandis Eucgr.B03500 I 0.969
evm.TU.supercontig_43.66 Carica papaya evm.TU.supercontig_43.66 I 0.977
Lus10006411.g Linum usitatissimum Lus10006411.g I 0.967
Lus10011356.g Linum usitatissimum Lus10011356.g I 0.956
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I 0.978
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I 0.978
Thhalv10007832m.g Eutrema salsugineum Thhalv10007832m.g I 0.888
SPL2 Arabidopsis thaliana AT5G43270 N 0.953
SPL3 Oryza indica BGIOSGA007499 N 0.918
BGIOSGA007643 Oryza indica BGIOSGA007643 N 0.908
SPL12 Oryza indica BGIOSGA020577 N 0.915
BGIOSGA020731 Oryza indica BGIOSGA020731 N 0.901
Bo7g065290 Brassica oleracea Bo7g065290 N 0.955
Bo9g058970 Brassica oleracea Bo9g058970 N 0.953
Bra027478 Brassica rapa Bra027478 N 0.953
Bra033671 Brassica rapa Bra033671 N 0.953
BRADI3G03510 Brachypodium distachyon BRADI3G03510 N 0.919
F775_31908 Aegilops tauschii F775_31908 N 0.915
GLYMA11G36980 Glycine max GLYMA11G36980 N 0.929
GRMZM2G065451 Zea mays GRMZM2G065451 N 0.914
GRMZM2G097275 Zea mays GRMZM2G097275 N 0.919
GRMZM2G126827 Zea mays GRMZM2G126827 N 0.930
GRMZM2G156621 Zea mays GRMZM2G156621 N 0.930
GRMZM2G163813 Zea mays GRMZM2G163813 N 0.929
GSMUA_Achr10G02970_001 Musa acuminata GSMUA_Achr10G02970_001 N 0.941
GSMUA_Achr3G05360_001 Musa acuminata GSMUA_Achr3G05360_001 N 0.941
GSMUA_Achr3G27750_001 Musa acuminata GSMUA_Achr3G27750_001 N 0.925
GSMUA_Achr4G05720_001 Musa acuminata GSMUA_Achr4G05720_001 N 0.958
GSMUA_Achr5G21990_001 Musa acuminata GSMUA_Achr5G21990_001 N 0.923
GSMUA_Achr5G22630_001 Musa acuminata GSMUA_Achr5G22630_001 N 0.933
GSMUA_Achr6G36010_001 Musa acuminata GSMUA_Achr6G36010_001 N 0.913
GSMUA_Achr8G23820_001 Musa acuminata GSMUA_Achr8G23820_001 N 0.933
GSMUA_Achr9G14160_001 Musa acuminata GSMUA_Achr9G14160_001 N 0.940
LPERR02G02980 Leersia perrieri LPERR02G02980 N 0.921
LPERR02G04880 Leersia perrieri LPERR02G04880 N 0.908
LPERR06G22200 Leersia perrieri LPERR06G22200 N 0.912
MLOC_11199 Hordeum vulgare MLOC_11199 N 0.917
MLOC_62426 Hordeum vulgare MLOC_62426 N 0.924
MTR_3g085180 Medicago truncatula MTR_3g085180 N 0.934
OB02G12930 Oryza brachyantha OB02G12930 N 0.923
OB02G14840 Oryza brachyantha OB02G14840 N 0.914
OB06G31550 Oryza brachyantha OB06G31550 N 0.901
OB06G34330 Oryza brachyantha OB06G34330 N 0.896
OBART02G03260 Oryza barthii OBART02G03260 N 0.918
OBART06G23820 Oryza barthii OBART06G23820 N 0.901
OBART06G26610 Oryza barthii OBART06G26610 N 0.915
OGLUM02G05530 Oryza glumaepatula OGLUM02G05530 N 0.908
OGLUM06G25070 Oryza glumaepatula OGLUM06G25070 N 0.901
OGLUM06G28030 Oryza glumaepatula OGLUM06G28030 N 0.915
OLONG_012160 Oryza longistaminata OLONG_012160 N 0.915
OLONG_025693 Oryza longistaminata OLONG_025693 N 0.918
OMERI02G03900 Oryza meridionalis OMERI02G03900 N 0.918
OMERI02G06420 Oryza meridionalis OMERI02G06420 N 0.908
OMERI06G23750 Oryza meridionalis OMERI06G23750 N 0.901
OMERI06G26720 Oryza meridionalis OMERI06G26720 N 0.915
ONIVA02G03070 Oryza nivara ONIVA02G03070 N 0.918
ONIVA02G05960 Oryza nivara ONIVA02G05960 N 0.908
ONIVA06G27990 Oryza nivara ONIVA06G27990 N 0.901
ONIVA06G29160 Oryza nivara ONIVA06G29160 N 0.915
OPUNC02G02570 Oryza punctata OPUNC02G02570 N 0.915
OPUNC02G04800 Oryza punctata OPUNC02G04800 N 0.908
OPUNC06G24320 Oryza punctata OPUNC06G24320 N 0.913
ORGLA02G0030600 Oryza glaberrima ORGLA02G0030600 N 0.918
ORGLA02G0051400 Oryza glaberrima ORGLA02G0051400 N 0.908
ORGLA06G0199900 Oryza glaberrima ORGLA06G0199900 N 0.901
ORGLA06G0222300 Oryza glaberrima ORGLA06G0222300 N 0.915
ORUFI02G03180 Oryza rufipogon ORUFI02G03180 N 0.918
ORUFI02G05750 Oryza rufipogon ORUFI02G05750 N 0.908
ORUFI06G25590 Oryza rufipogon ORUFI06G25590 N 0.901
ORUFI06G28570 Oryza rufipogon ORUFI06G28570 N 0.915
OS02G0139400 Oryza sativa OS02G0139400 N 0.918
SPL4 Oryza sativa OS02G0174100 N 0.908
SPL11 Oryza sativa OS06G0663500 N 0.901
SPL12 Oryza sativa OS06G0703500 N 0.915
PGSC0003DMG400034310 Solanum tuberosum PGSC0003DMG400034310 N 0.937
POPTR_0018s14680 Populus trichocarpa POPTR_0018s14680 N 0.897
PRUPE_ppa005013mg Prunus persica PRUPE_ppa005013mg N 0.955
Sb04g003175 Sorghum bicolor Sb04g003175 N 0.897
Sb04g004940 Sorghum bicolor Sb04g004940 N 0.930
SPL2 Arabidopsis lyrata scaffold_800740.1 N 0.953
Si017520m.g Setaria italica Si017520m.g N 0.892
Si017749m.g Setaria italica Si017749m.g N 0.962
Solyc04g045560.2 Solanum lycopersicum Solyc04g045560.2 N 0.946
Solyc05g015510.2 Solanum lycopersicum Solyc05g015510.2 N 0.909
TCM_008772 Theobroma cacao TCM_008772 N 0.961
Traes_6AS_32A35158A Triticum aestivum Traes_6AS_32A35158A N 0.922
Traes_6AS_99C6A3B0B Triticum aestivum Traes_6AS_99C6A3B0B N 0.912
Traes_6BS_F50663DF7 Triticum aestivum Traes_6BS_F50663DF7 N 0.912
Traes_6DS_7B1596298 Triticum aestivum Traes_6DS_7B1596298 N 0.915
Traes_6DS_C4D93239C Triticum aestivum Traes_6DS_C4D93239C N 0.922
TRIUR3_09477 Triticum urartu TRIUR3_09477 N 0.912
SPL2 Vitis vinifera VIT_11s0065g00170 N 0.900
Pm007020 Prunus mume Pm007020 N 0.954
cassava12059.valid.m1 Manihot esculenta cassava12059.valid.m1 N 0.952
cassava6540.valid.m1 Manihot esculenta cassava6540.valid.m1 N 0.964
mgf010397m Mimulus guttatus mgf010397m N 0.969
Bostr.3148s0148 Boechera stricta Bostr.3148s0148 N 0.945
Cagra.8694s0002 Capsella grandiflora Cagra.8694s0002 N 0.951
Carubv10026434m.g Capsella rubella Carubv10026434m.g N 0.951
Ciclev10031391m.g Citrus clementina Ciclev10031391m.g N 0.951
Gorai.002G182700 Gossypium raimondii Gorai.002G182700 N 0.954
Gorai.005G166500 Gossypium raimondii Gorai.005G166500 N 0.902
Lus10021614.g Linum usitatissimum Lus10021614.g N 0.910
MDP0000155354 Malus domestica MDP0000155354 N 0.954
orange1.1g011640m.g Citrus sinensis orange1.1g011640m.g N 0.951
Pavir.Aa03225 Panicum virgatum Pavir.Aa03225 N 0.890
Pavir.Ab00358 Panicum virgatum Pavir.Ab00358 N 0.890
Pavir.Ab00499 Panicum virgatum Pavir.Ab00499 N 0.961
Pavir.J20730 Panicum virgatum Pavir.J20730 N 0.961
SapurV1A.0430s0160 Salix purpurea SapurV1A.0430s0160 N 0.897
Thhalv10003215m.g Eutrema salsugineum Thhalv10003215m.g N 0.953
PK16953.1 Cannabis sativa PK16953.1 N 0.957
LjSGA_017270.1 Lotus japonicus LjSGA_017270.1 N 0.936
LjSGA_032871.1 Lotus japonicus LjSGA_032871.1 N 0.956