cassava12059.valid.m1 (Manihot esculenta)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 cassava12059.valid.m1 T323231_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava12059.valid.m1 SBP 193 267

Links

Other SBP family TFs
Other Manihot esculenta TFs

119 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo7g049940 Brassica oleracea Bo7g049940 I 0.893
Bra030041 Brassica rapa Bra030041 I 0.896
BRADI3G05510 Brachypodium distachyon BRADI3G05510 I 0.953
GSMUA_Achr4G12470_001 Musa acuminata GSMUA_Achr4G12470_001 I 0.952
GSMUA_Achr9G23140_001 Musa acuminata GSMUA_Achr9G23140_001 I 0.933
PGSC0003DMG400026736 Solanum tuberosum PGSC0003DMG400026736 I 0.952
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I 0.968
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I 0.968
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I 0.970
Ca_08506 Cicer arietinum Ca_08506 I 0.908
Ca_11356 Cicer arietinum Ca_11356 I 0.966
29929.m004641 Ricinus communis 29929.m004641 I 0.960
mgf019346m Mimulus guttatus mgf019346m I 0.946
Aquca_018_00218 Aquilegia coerulea Aquca_018_00218 I 0.960
Eucgr.B03500 Eucalyptus grandis Eucgr.B03500 I 0.955
evm.TU.supercontig_43.66 Carica papaya evm.TU.supercontig_43.66 I 0.966
Lus10006411.g Linum usitatissimum Lus10006411.g I 0.956
Lus10011356.g Linum usitatissimum Lus10011356.g I 0.937
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I 0.968
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I 0.968
Thhalv10007882m.g Eutrema salsugineum Thhalv10007882m.g I 0.889
SPL2 Arabidopsis thaliana AT5G43270 N 0.959
SPL3 Oryza indica BGIOSGA007499 N 0.922
BGIOSGA007643 Oryza indica BGIOSGA007643 N 0.920
SPL12 Oryza indica BGIOSGA020577 N 0.919
Bo7g065290 Brassica oleracea Bo7g065290 N 0.957
Bo9g058970 Brassica oleracea Bo9g058970 N 0.959
Bra027478 Brassica rapa Bra027478 N 0.959
Bra033671 Brassica rapa Bra033671 N 0.959
BRADI3G03510 Brachypodium distachyon BRADI3G03510 N 0.917
F775_31908 Aegilops tauschii F775_31908 N 0.916
GLYMA11G36980 Glycine max GLYMA11G36980 N 0.953
GLYMA18G00903 Glycine max GLYMA18G00903 N 0.917
GRMZM2G065451 Zea mays GRMZM2G065451 N 0.923
GRMZM2G097275 Zea mays GRMZM2G097275 N 0.923
GRMZM2G126827 Zea mays GRMZM2G126827 N 0.951
GRMZM2G156621 Zea mays GRMZM2G156621 N 0.951
GRMZM2G163813 Zea mays GRMZM2G163813 N 0.951
GSMUA_Achr10G02970_001 Musa acuminata GSMUA_Achr10G02970_001 N 0.966
GSMUA_Achr3G05360_001 Musa acuminata GSMUA_Achr3G05360_001 N 0.966
GSMUA_Achr3G27750_001 Musa acuminata GSMUA_Achr3G27750_001 N 0.917
GSMUA_Achr4G05720_001 Musa acuminata GSMUA_Achr4G05720_001 N 0.933
GSMUA_Achr5G21990_001 Musa acuminata GSMUA_Achr5G21990_001 N 0.955
GSMUA_Achr5G22630_001 Musa acuminata GSMUA_Achr5G22630_001 N 0.964
GSMUA_Achr6G36010_001 Musa acuminata GSMUA_Achr6G36010_001 N 0.953
GSMUA_Achr8G23820_001 Musa acuminata GSMUA_Achr8G23820_001 N 0.951
GSMUA_Achr9G14160_001 Musa acuminata GSMUA_Achr9G14160_001 N 0.965
LPERR02G02980 Leersia perrieri LPERR02G02980 N 0.925
LPERR02G04880 Leersia perrieri LPERR02G04880 N 0.920
LPERR06G22200 Leersia perrieri LPERR06G22200 N 0.922
MLOC_11199 Hordeum vulgare MLOC_11199 N 0.913
MLOC_62426 Hordeum vulgare MLOC_62426 N 0.948
MTR_3g085180 Medicago truncatula MTR_3g085180 N 0.964
OB02G12930 Oryza brachyantha OB02G12930 N 0.928
OB02G14840 Oryza brachyantha OB02G14840 N 0.915
OB06G34330 Oryza brachyantha OB06G34330 N 0.937
OBART02G03260 Oryza barthii OBART02G03260 N 0.922
OBART06G26610 Oryza barthii OBART06G26610 N 0.919
OGLUM02G05530 Oryza glumaepatula OGLUM02G05530 N 0.920
OGLUM06G28030 Oryza glumaepatula OGLUM06G28030 N 0.919
OLONG_012160 Oryza longistaminata OLONG_012160 N 0.919
OLONG_025693 Oryza longistaminata OLONG_025693 N 0.922
OMERI02G03900 Oryza meridionalis OMERI02G03900 N 0.922
OMERI02G06420 Oryza meridionalis OMERI02G06420 N 0.920
OMERI06G26720 Oryza meridionalis OMERI06G26720 N 0.919
ONIVA02G03070 Oryza nivara ONIVA02G03070 N 0.922
ONIVA02G05960 Oryza nivara ONIVA02G05960 N 0.895
ONIVA06G29160 Oryza nivara ONIVA06G29160 N 0.919
OPUNC02G02570 Oryza punctata OPUNC02G02570 N 0.925
OPUNC02G04800 Oryza punctata OPUNC02G04800 N 0.920
OPUNC06G24320 Oryza punctata OPUNC06G24320 N 0.918
ORGLA02G0030600 Oryza glaberrima ORGLA02G0030600 N 0.922
ORGLA02G0051400 Oryza glaberrima ORGLA02G0051400 N 0.920
ORGLA06G0222300 Oryza glaberrima ORGLA06G0222300 N 0.919
ORUFI02G03180 Oryza rufipogon ORUFI02G03180 N 0.922
ORUFI02G05750 Oryza rufipogon ORUFI02G05750 N 0.920
ORUFI06G28570 Oryza rufipogon ORUFI06G28570 N 0.919
OS02G0139400 Oryza sativa OS02G0139400 N 0.922
SPL4 Oryza sativa OS02G0174100 N 0.920
SPL12 Oryza sativa OS06G0703500 N 0.919
PGSC0003DMG400034310 Solanum tuberosum PGSC0003DMG400034310 N 0.961
POPTR_0018s14680 Populus trichocarpa POPTR_0018s14680 N 0.927
PRUPE_ppa005013mg Prunus persica PRUPE_ppa005013mg N 0.967
Sb04g003175 Sorghum bicolor Sb04g003175 N 0.901
Sb04g004940 Sorghum bicolor Sb04g004940 N 0.951
SPL2 Arabidopsis lyrata scaffold_800740.1 N 0.959
Si017520m.g Setaria italica Si017520m.g N 0.907
Si017749m.g Setaria italica Si017749m.g N 0.935
Solyc05g015510.2 Solanum lycopersicum Solyc05g015510.2 N 0.942
TCM_008772 Theobroma cacao TCM_008772 N 0.978
Traes_6AS_32A35158A Triticum aestivum Traes_6AS_32A35158A N 0.928
Traes_6AS_99C6A3B0B Triticum aestivum Traes_6AS_99C6A3B0B N 0.913
Traes_6BS_F50663DF7 Triticum aestivum Traes_6BS_F50663DF7 N 0.913
Traes_6DS_7B1596298 Triticum aestivum Traes_6DS_7B1596298 N 0.916
Traes_6DS_C4D93239C Triticum aestivum Traes_6DS_C4D93239C N 0.928
TRIUR3_09477 Triticum urartu TRIUR3_09477 N 0.913
SPL2 Vitis vinifera VIT_11s0065g00170 N 0.929
Pm007020 Prunus mume Pm007020 N 0.969
cassava6540.valid.m1 Manihot esculenta cassava6540.valid.m1 N 0.973
mgf010397m Mimulus guttatus mgf010397m N 0.950
Bostr.3148s0148 Boechera stricta Bostr.3148s0148 N 0.954
Cagra.8694s0002 Capsella grandiflora Cagra.8694s0002 N 0.958
Carubv10026434m.g Capsella rubella Carubv10026434m.g N 0.958
Ciclev10031391m.g Citrus clementina Ciclev10031391m.g N 0.966
Gorai.002G182700 Gossypium raimondii Gorai.002G182700 N 0.974
Gorai.005G166500 Gossypium raimondii Gorai.005G166500 N 0.942
Lus10021614.g Linum usitatissimum Lus10021614.g N 0.952
MDP0000155354 Malus domestica MDP0000155354 N 0.969
orange1.1g011640m.g Citrus sinensis orange1.1g011640m.g N 0.966
Pavir.Aa03225 Panicum virgatum Pavir.Aa03225 N 0.904
Pavir.Ab00358 Panicum virgatum Pavir.Ab00358 N 0.904
Pavir.Ab00499 Panicum virgatum Pavir.Ab00499 N 0.938
Pavir.J20730 Panicum virgatum Pavir.J20730 N 0.938
SapurV1A.0430s0160 Salix purpurea SapurV1A.0430s0160 N 0.927
Thhalv10003215m.g Eutrema salsugineum Thhalv10003215m.g N 0.959
PK16953.1 Cannabis sativa PK16953.1 N 0.970
LjSGA_017270.1 Lotus japonicus LjSGA_017270.1 N 0.963
LjSGA_032871.1 Lotus japonicus LjSGA_032871.1 N 0.976
PDK_20s1305791g002 Phoenix dactylifera PDK_20s1305791g002 N 0.893