AMTR_s00029p00245970 (Amborella trichopoda)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 AMTR_s00029p00245970 T343667_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.903 0.685
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.900 0.685
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.900 0.671
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.900 0.671
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.900 0.671
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.897 0.589
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.884 0.562
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.884 0.562
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.883 0.699
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.841 0.548
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.824 0.575
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.824 0.575
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN09809 TCP 36 113

Links

Other TCP family TFs
Other Amborella trichopoda TFs

327 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ASIL2 Arabidopsis thaliana AT3G14180 D 0.000
Carubv10015321m.g Capsella rubella Carubv10015321m.g I 0.000
cassava34877.m1 Manihot esculenta cassava34877.m1 I 0.000
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I 0.000
Cucsa.359990 Cucumis sativus Cucsa.359990 I 0.000
mgf000047m Mimulus guttatus mgf000047m I 0.000
mgf006505m Mimulus guttatus mgf006505m I 0.000
Aquca_020_00550 Aquilegia coerulea Aquca_020_00550 I 0.000
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.000
Bostr.28625s0284 Boechera stricta Bostr.28625s0284 I 0.000
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I 0.000
Bostr.7128s0077 Boechera stricta Bostr.7128s0077 I 0.000
Cagra.0769s0020 Capsella grandiflora Cagra.0769s0020 I 0.000
Cagra.3631s0002 Capsella grandiflora Cagra.3631s0002 I 0.000
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I 0.000
Carubv10009310m.g Capsella rubella Carubv10009310m.g I 0.000
cassava47424.m1 Manihot esculenta cassava47424.m1 I 0.000
Carubv10015798m.g Capsella rubella Carubv10015798m.g I 0.000
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I 0.000
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.000
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I 0.000
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I 0.000
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.000
MDP0000255104 Malus domestica MDP0000255104 I 0.000
MDP0000281471 Malus domestica MDP0000281471 I 0.000
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I 0.000
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I 0.000
Thhalv10011582m.g Eutrema salsugineum Thhalv10011582m.g I 0.000
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I 0.000
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I 0.000
29727.m000472 Ricinus communis 29727.m000472 I 0.000
Bo3g065930 Brassica oleracea Bo3g065930 I 0.000
Bo6g033010 Brassica oleracea Bo6g033010 I 0.000
Bo6g050870 Brassica oleracea Bo6g050870 I 0.000
Bra014370 Brassica rapa Bra014370 I 0.000
fgenesh1_pg.C_scaffold_3001317 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001317 I 0.000
ASIL1 Arabidopsis lyrata fgenesh2_kg.1__4489__AT1G54060.1 I 0.000
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I 0.000
GLYMA07G04790 Glycine max GLYMA07G04790 I 0.000
GLYMA16G01370 Glycine max GLYMA16G01370 I 0.000
GSMUA_Achr3G05880_001 Musa acuminata GSMUA_Achr3G05880_001 I 0.000
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I 0.000
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.000
MTR_8g022290 Medicago truncatula MTR_8g022290 I 0.000
PGSC0003DMG400037972 Solanum tuberosum PGSC0003DMG400037972 I 0.000
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I 0.000
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I 0.000
cassava116.valid.m1 Manihot esculenta cassava116.valid.m1 I 0.000
Solyc03g122030.1 Solanum lycopersicum Solyc03g122030.1 I 0.000
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I 0.000
Pm013209 Prunus mume Pm013209 I 0.000
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I 0.000
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.000
Cla015773 Citrullus lanatus Cla015773 I 0.000
TCM_042467 Theobroma cacao TCM_042467 N 0.000
AMTR_s00007p00263040 Amborella trichopoda AMTR_s00007p00263040 N 0.000
PK22475.1 Cannabis sativa PK22475.1 N 0.000
SapurV1A.2810s0010 Salix purpurea SapurV1A.2810s0010 N 0.000
SapurV1A.0504s0110 Salix purpurea SapurV1A.0504s0110 N 0.000
VIT_09s0002g00720 Vitis vinifera VIT_09s0002g00720 N 0.000
MDP0000943251 Malus domestica MDP0000943251 N 0.000
MDP0000097759 Malus domestica MDP0000097759 N 0.000
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.000
POPTR_0001s06330 Populus trichocarpa POPTR_0001s06330 N 0.000
GSMUA_Achr9G14340_001 Musa acuminata GSMUA_Achr9G14340_001 N 0.000